Detailed information of g2756.t1 in Montipora capitata

Genomic Location: Sc0000043:257172...279219
NR annotation: CAH3176250.1, unnamed protein product [Porites evermanni]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P49454Centromere protein F OS=Homo sapiens OX=9606 GN=CENPF PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008065 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for g2756.t1 in Montipora capitata.
 InterPro
InterPro termTypeDescriptionSource
IPR043513
all species →
FamilyCentromere protein Cenp-FInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18874
all species →
CMF/LEK/CENP CELL DIVISION-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000278
all species →
Biological Processmitotic cell cycleInterproscan
GO:0000775
all species →
Cellular Componentchromosome, centromeric regionInterproscan
GO:0000922
all species →
Cellular Componentspindle poleInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan
GO:0010389
all species →
Biological Processregulation of G2/M transition of mitotic cell cycleInterproscan
GO:0051310
all species →
Biological Processmetaphase chromosome alignmentInterproscan
GO:0070840
all species →
Molecular Functiondynein complex bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g2756.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2756.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
48TPM > 0
3Conditions
316.2Max TPM
141.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organisms · ambient pH treatment 21 21 144.47 282.36
whole organisms · low pH treatment 15 15 143.06 316.24
whole organisms · extra low pH treatment pH treatment 12 12 133.43 257.31

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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