Detailed information of g27707.t1 in Montipora capitata

Genomic Location: xfSc0000049:178211...179461
NR annotation: XP_015761994.1, PREDICTED: tRNA-splicing endonuclease subunit Sen34-like [Acropora digitifera]
Species abbreviation MCAPI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BMZ5tRNA-splicing endonuclease subunit Sen34 OS=Mus musculus OX=10090 GN=Tsen34 PE=2 SV=2
Q9BSV6tRNA-splicing endonuclease subunit Sen34 OS=Homo sapiens OX=9606 GN=TSEN34 PE=1 SV=1
Q7SAK9Probable tRNA-splicing endonuclease subunit tsp-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=tsp-4 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009655 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01974
all species →		tRNA_int_endotRNA intron endonuclease, catalytic C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006677
all species →		DomaintRNA intron endonuclease, catalytic domain-likeInterproscan
IPR006676
all species →		FamilytRNA-splicing endonucleaseInterproscan
IPR011856
all species →		Homologous_superfamilytRNA endonuclease-like domain superfamilyInterproscan
IPR036167
all species →		Homologous_superfamilytRNA intron endonuclease, catalytic domain-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13070
all species →		TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000213
all species →		Molecular FunctiontRNA-intron endonuclease activityInterproscan
GO:0006388
all species →		Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0000379
all species →		Biological ProcesstRNA-type intron splice site recognition and cleavageInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15323TSEN34; tRNA-splicing endonuclease subunit Sen34EC:4.6.1.16
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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