Detailed information of g27732.t1 in Montipora capitata

Genomic Location: xfSc0000052:118370...166932
NR annotation: XP_044178010.1, 5'-3' exoribonuclease 1-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IZH25'-3' exoribonuclease 1 OS=Homo sapiens OX=9606 GN=XRN1 PE=1 SV=1
P977895'-3' exoribonuclease 1 OS=Mus musculus OX=10090 GN=Xrn1 PE=1 SV=1
P403835'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=exo2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001148 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03159
all species →		XRN_NXRN 5'-3' exonuclease N-terminusFamilyInterproscan
PF18334
all species →		XRN1_D2_D3Exoribonuclease Xrn1 D2/D3 domainDomainInterproscan
PF18129
all species →		SH3_12Xrn1 SH3-like domainDomainInterproscan
PF17846
all species →		XRN_MXrn1 helical domainDomainInterproscan
PF18332
all species →		XRN1_D1Exoribonuclease Xrn1 D1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027073
all species →		Family5'-3' exoribonucleaseInterproscan
IPR004859
all species →		DomainXrn1, N-terminalInterproscan
IPR041106
all species →		DomainExoribonuclease Xrn1, D2/D3 domainInterproscan
IPR041385
all species →		Domain5'-3' exoribonuclease 1, SH3-like domainInterproscan
IPR016494
all species →		Family5'-3' exoribonuclease 1Interproscan
IPR047007
all species →		Homologous_superfamily5'-3' exoribonuclease 1, D1 domain superfamilyInterproscan
IPR041412
all species →		DomainXrn1, helical domainInterproscan
IPR047008
all species →		Homologous_superfamily5'-3' exoribonuclease 1, SH3-like domain superfamilyInterproscan
IPR040992
all species →		Domain5'-3' exoribonuclease 1, D1 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12341
all species →		5'->3' EXORIBONUCLEASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0004527
all species →		Molecular Functionexonuclease activityInterproscan
GO:0000956
all species →		Biological Processnuclear-transcribed mRNA catabolic processInterproscan
GO:0008409
all species →		Molecular Function5'-3' exonuclease activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12618XRN1, SEP1, KEM1; 5'-3' exoribonuclease 1EC:3.1.13.-
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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