Gene detail

Detailed information of g2778.t1 in Acropora digitifera

Genomic Location: chr2Alt:4436121...4441569
NR annotation: XP_015778016.1, PREDICTED: tubulin polyglutamylase TTLL11-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr2Alt.g2778.t1

TTCATATGCATGTGTACTCATGCATGTGTTCATTTAAATATCGATAAAAAAGTCCATTCTCTGCTACATTGTACACCAACATGAAATCAGATGATCCTGAATCGGACAAAATAGTGTCCATTAATCAAGTCAAACCGCTTGTTACACAGAAGGTTCCTCGCGTGGTTACATCGATTCCCGAGAAAAATGGGCATCGAAAAGGAGACAAACGCGTCGTTGCCAAGGCCACAGTCCATTCGGAGGGTGGAATCAAGGAAATCAGGAAATCGCGAACATTGATCTCTGATCTCGTTGCAGATGGAAAGAGGGGAAAAAGAAAGCGCAGAAGAGGAGCAACATCCTCTTATGGCCCGTCTGTCGACATTTCGCGTGCTAGAGCAAGTTGCGATGTTGTCCGTCTTGCAATCAAGGAGTTGGGATGGCGCGAGATTCCAGCAACAAGGCGAAGTGGATGCGACTTTTATTGGCTTGATGGTCATTTTGAGTTGCCTGATTATGCAGAAACTGGACAACTCAGCAAATTTTTCGGCATGTCAGAAGCTGCCCACAAAGTAGAACTGACAAGACAAATCAACCGCCTTCAGCTGCTTTTCCCACGGGAATTCACCTTCTACCCTAAGACCTGGATTCTGCCTGAGGAATACAGTGACCTTCTTGCATACGCATCACAGAAGAGGAAGCCATCGACTTTCATCATAAAACCTGACTGTGGGTCCCAGGGGGATGGGATCTTCTTAACACAAAATGTTCATGACATTCAACTGAGTACAGCCCTAGCAAGGCCATCCGTAATTCAAGAGTATATCGCAGAACCCTACCTCTTGGAAAAGTTTAAATTTGACTTGAGGATTTACGTTGTGTTGAAGTGTCTGGATCCATTGCAAGTGTATATTTGTCGAGAAGGAATGGCACGCTTCTGCACGGAACATTACAACCCGCCCACACCTAAAAATATATTCAAGGCTTATATGCACTTAACCAACTATTCATTGAACAAGTATAGCTCAGGGTATGTTCAAAGTGATGCTGACGATAAAGGAAGCAAGCAAAAGCTTAGCGCTGTCTTCAGACAACTTGCAAAGGAAGGCTGTGACATAAAGCGTCTGTGGGCTGATATAGACAAGGTCATTTGCCAGACTATGATTGCACTTGTGCCAATTCTTAAACTTCAGAATCAGGTGATCAGTGCAGAATTGAAGCAGAAATTGAAGTGTTTTCAAATTTTAGGTTTTGACATTTTACTGGACAAAAATCTTAATCCTCTTCTTCTCGAGGTCAATTCTAGTCCAAGTCTAAGAATTGATCATGAAGAAGAAGTTAGTCCTGGGAAGCTTGAGCATGTTATTAGTGTGACAGACTTGGACATCAAACTTTCAGTTGTGAAAGATGCCATGGTGCTAGTTTGGCAGCATAGGAAAATGGATGATAGCCCTCCTGAATTTGCAGGTTGCTTGCACCAAATTTATCCTAAGCTGGCTTCCCAGTTGGATCACCTTAGAGTTGTGGAAAGGTGTGTGGTACTCTTCAGACACTTTGTGGGTGTTCGCACATCTACCCGAATGGGACCAACATCTTTCCGCATGATGGCAAGGCGATGTCATCTCACTGAATTTGGCTTCACTCTTGCTGCGTTTGACATTATGTTCATCAACATGAGTCGCCGCTATCCAGCGTGTAATTCAGGTCGTGCAGCTCTTAGCTTTAATGGCTTCTGTGAATCATTGATTGCAATTGGACACAAGAAATTCTCACTGACGATGAGATTGGAACCTGTGCAAATATTACTGACTGTTTTAAAACACTGCGAGCAACACTTGCGTTGGCCAGCAGGGAAGACTGTAGATGTCTCCCAACCTCAAAGAAAGCAAATACTACCTTCCCGATTAAGTCAGAGAAACTTTAGCAGTTGCTTTGTGTTATCAACAAATCATCTCACCAAAGAAAATCACCAGTGAATCATTGGTCATTATGTCTTGCTAACAGTTGGCAAAAGACAGTCAGTTTGACTGCCTTAAGATGGGCAAGGTTAAAGGAAGCGTTTGGTTTCTACAGAAACTATGGTGGGGCATCAGTGGCTCTTTACTCTGATGAAGGGCTAACGCTCCAAACATCAGCTTTGCAATTATTTTACAGTGGAAATCTCACCCTTGTCAACCCATGTTATGATTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NHH1	Tubulin polyglutamylase TTLL11 OS=Homo sapiens OX=9606 GN=TTLL11 PE=1 SV=3
A4Q9F4	Tubulin polyglutamylase TTLL11 OS=Mus musculus OX=10090 GN=Ttll11 PE=1 SV=1
H2KZM9	Tubulin polyglutamylase ttll-11 OS=Caenorhabditis elegans OX=6239 GN=ttll-11 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03133 all species →	TTL	Tubulin-tyrosine ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004344 all species →	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12241 all species →	TUBULIN POLYGLUTAMYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0018095 all species →	Biological Process	protein polyglutamylation	Interproscan
GO:0070740 all species →	Molecular Function	tubulin-glutamic acid ligase activity	Interproscan
GO:0036211 all species →	Biological Process	protein modification process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16604	TTLL11; tubulin polyglutamylase TTLL11	EC:6.3.2.-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.