Detailed information of g278.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_022301960.1, DNA-directed RNA polymerases I and III subunit RPAC2-like [Crassostrea virginica]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q1RMG8DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=POLR1D PE=2 SV=1
P0DPB6DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=POLR1D PE=1 SV=1
Q6DRI4DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=polr1d PE=3 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2
Transcription Factors FamilyFork_head

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01549ShKShK domain-likeDomainInterproscan
PF12053Par3_HAL_N_termN-terminal of Par3 and HAL proteinsFamilyInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF01170UPF0020Putative RNA methylase family UPF0020DomainInterproscan
PF00250ForkheadForkhead domainDomainInterproscan
PF13656RNA_pol_L_2RNA polymerase Rpb3/Rpb11 dimerisation domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF02201SWIBSWIB/MDM2 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR039119FamilyABT1/Esf2Interproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR003582DomainShKT domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR021922DomainPar3/HAL, N-terminalInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR051131FamilyNEK Ser/Thr protein kinase family, NIMA subfamilyInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR000241DomainRibosomal RNA large subunit methyltransferase K/L-like, methyltransferase domainInterproscan
IPR001766DomainFork head domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR050211FamilyForkhead box domain-containing proteinInterproscan
IPR047519DomainForkhead box protein Q2-like, forkhead domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR009025DomainDNA-directed RNA polymerase, RBP11-like dimerisation domainInterproscan
IPR036603Homologous_superfamilyRNA polymerase, RBP11-like subunitInterproscan
IPR033898FamilyDNA-directed RNA polymerases I and III subunit AC19Interproscan
IPR022905FamilyDNA-directed RNA polymerase subunit Rpo11-likeInterproscan
IPR045010FamilyMedium-chain dehydrogenase/reductaseInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036885Homologous_superfamilySWIB/MDM2 domain superfamilyInterproscan
IPR003121DomainSWIB/MDM2 domainInterproscan
IPR019835DomainSWIB domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46888ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATEDInterproscan
PTHR12311ACTIVATOR OF BASAL TRANSCRIPTION 1Interproscan
PTHR24394ZINC FINGER PROTEINInterproscan
PTHR44899CAMK FAMILY PROTEIN KINASEInterproscan
PTHR13370RNA METHYLASE-RELATEDInterproscan
PTHR11829FORKHEAD BOX PROTEINInterproscan
PTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIInterproscan
PTHR43205PROSTAGLANDIN REDUCTASEInterproscan
PTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY DInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000447Biological Processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000472Biological Processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000480Biological Processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0034462Biological Processsmall-subunit processome assemblyInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004809Molecular Functionobsolete tRNA (guanine-N2-)-methyltransferase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0001054Molecular FunctionRNA polymerase I activityInterproscan
GO:0001056Molecular FunctionRNA polymerase III activityInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0005666Cellular ComponentRNA polymerase III complexInterproscan
GO:0005736Cellular ComponentRNA polymerase I complexInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0006693Biological Processprostaglandin metabolic processInterproscan
GO:0016628Molecular Functionoxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptorInterproscan
GO:0047522Molecular Function15-oxoprostaglandin 13-oxidase [NAD(P)+] activityInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0016514Cellular ComponentSWI/SNF complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20872NEK2; serine/threonine-protein kinase Nek2EC:2.7.11.1
Transcription machineryko03021deepkoala
Chromosome and associated proteinsko03036deepkoala
Chromosome and associated proteinsko03036deepkoala

TOP