Gene detail

Detailed information of g27942.t1 in Montipora capitata

Genomic Location: xfSc0000074:66250...97091
NR annotation: XP_044183853.1, LOW QUALITY PROTEIN: carbamoyl-phosphate synthase [ammonia], mitochondrial-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g27942.t1

atgcatacagaaaaacctatattctctgcgcagtttcatccagaggcctttggtggacctacagatactgagtttatgtttgacactttcatgaaccttgttaagggcggaaaagcgtcactatcccgtgcaatgtcgcagcccagaaaagtaccaccaccccctaaggtgtccaaagttcttgtcttggggtctggaggattatcaataggccaggctggcgagtttgactactcaggatcacaagcaattaaagctctaaaggaagagaacataaaaactattttaatgaatcccaacattgcttctgttcaaacgaatgaagaaggcgaaaaacaggcagatgtagtatactttgtgcccatcaccccagagtttgttgaagatgtcattaggcgtgaacggccagatggaatcttgctatccatgggtggacagactgcattaaattgtggagttcagttgcatgacagaggtgtattgcagagatatggtgtggaggttattggaacacctatcaagtctatcaaggcctcggaagacagacagacgtttgctgacaaactgaaagaaattggagagaagattgcaccaagtgtcgctgtggaaacggtagaagcagccatgaaagccgcagacagtattgggtaccctgtgatggtccgtgctgcttatgcacttgggggactgggatcaggcttgtgtgaagatgagaaaaagttaagagaagtttccacccaggcactggcattgtcaaatcagattttgatagagaagtcgctcttagggtggaaagagattgaatatgaagtcgtccgagatgcggcagacaactgtatcacagtttgcaatatggagaattttgatccccttggagttcatacaggtgattccattgtcgtagcaccaagtcaaactctttctaaccaggaatatcacatgctgcgagaaactgcactcaaggttgtgcgccatcttggcatcattggtgaatgtaacattcagtatgctctgcatccgtcatctctggagtattgcatcattgaagtcaatgctcgtttgtccagaagctcagctttggcttccaaagcaacaggatatcctctggcgttcattgctgcaaagcttgctctcggaatacagctccccgacataaagaactccacaacacaacagacaactgcctgttttgaacctagtttggattatattgtgaccaagattcctcgatgggaccttgaccgtttccagatgacgtccaaacagattggcagttcaatgaagagtgttggagaggtgatggcgattggtcgaacattcgaagagagcttccagaaggcattacgaatggtgcatccttctgtggatggatttgtgccaaagcttcccagcatgcaccaggagttgtccgaatgcaaacttgaggacgagcttgtcgttccatcaaacaccagagtctattccatcgcaaaggccttgcacgaagactacaccgtagatcaaatacacgaactgacgagtatagatcggtggttcttacacaaactgcatcgtattgtggatattgaaagggacttaaagaatcagagtttgggctctcttccagcagaagatttgcttgaagctaagcaagctggattttctgacagacagcttgctaagttgattggaggtcaagagactgatatgaggaatgagagaattaagcatggagtcaagccctgggtcaaacagattgatacaatggcagcggagtatccagccaagaccaactatctttacatgacgtataacggccaggagcatgatcttgtctttgatgatcaaggtgtcatggtgcttggctgtggtccgtatcacattggtagcagtgtggagtttgactggtgcgctgtttcctgtatcaggacacttagaaacttaggaatcaaaacggtggttgtgaatcacaacccagagaccgtcagcaccgattacgatgaatgtgatcgtctttactttgaggagctctcccttgaaagagtcttggacatctatcaacaagaggtttgcaaaggagccgtcatctctgtcggtggtcagatacccaataacttagctctcccattgcacctgaatgatgtgaagatattgggtacgtctcctctcatgattgacgctgctgaagaaagatctcgtttttccgccattcttgatgaaattggtgtcgggcaggcaccatggagagctgtttcatctgtggacgacgctctgaatttcgctgcaactgttggatatccctgccttctgaggccttcatatgttctgagtggctcagccatgaatgtggcgtatggtccagtggagttgaagaagtttttgggtgaagcggcaagagtatcccaggaccatcccgttgtcatgacaaagttcattgaaggcgctcgagaaattgaaatggatgctgtggctaagaatggaaaggttgttgcgcacgctatttcggagcatgttgagaatgctggagttcactctggtgacgctacactgatcttaccgccacaaaccatcagcgaagaggatatttcagaggtgattgagtgcaatctgcgtgcatctcgatctttccctttcgtctccaagacggttggtactgattttattgatgtagctaccagggttatggtcaactatcctcttgatgagcataatttgccccacttggacacgcccttacagccatctggatatgtcggcattaaggcgcccatgttttcgtggcctcgtcttcgtgacgccgatcctttgctcagatgtgaaatggcttccactggcgaggtcgcatgtttcggcgctaatgtcgacgaagcttttctgaaggccttgatgtcaactggcttccgtctgcctaagaagggcattcttcttggtattcagcaatctttgcaaccaaagtttctaccaacggcgaacaaacttcaccagcttggatttaatctgtacgcaaccgaagccacttcacagtacctcaatgagcacaatatcccagctcagacagtggaatggccactccacagcgccggaatcaattcgacagcaacaagattgattcaagaaaaagaagtggatcttgtaattaatcttcccaatcaaaacacgaaatacatcaaggataactaccttataaggagagcttcaatagactgcggtgttccgctgatcacaaacttggaggtaagttcaatgcaactgtgcggttttggtcaccaactaagtggtggcaatgatgaggatgatgatgatgatgaaatggcagaaacgggactgatagttgctgatactccgcagtag

Transcript

g27942.t1

ATGCATACAGAAAAACCTATATTCTCTGCGCAGTTTCATCCAGAGGCCTTTGGTGGACCTACAGATACTGAGttTATGTTTGACACTTTCATGAACCTTGTTAAGGGCGGAAAAGCGTCACTATCCCGTGCAATGTCGCAGCCCAGAAAAGTACCACCACCCCCTAAGGTGTCCAAAGTTCTTGTCTTGGGGTCTGGAGGATTATCAATAGGCCAGGCTGGCGAGTTTGACTACTCAGGATCACAAGCAATTAAAGCTCTAAAGGAAGAGAAcataaaaactattttaatgaatcCCAACATTGCTTCTGTTCAAACGAATGAAGAAGGCGAAAAACAGGCAGATGTAGTATACTTTGTGCCCATCACCCCAGAGTTTGTTGAAGATGTCATTAGGCGTGAACGGCCAGATGGAATCTTGCTATCCATGGGTGGACAGACTGCATTAAATTGTGGAGTTCAGTTGCATGACAGAGGTGTATTGCAGAGATATGGTGTGGAGGTTATTGGAACACCTATCAAGTCTATCAAGGCCTCGGAAGACAGACAGACGTTTGCTGACAAACTGAAAGAAATTGGAGAGAAGATTGCACCAAGTGTCGCTGTGGAAACGGTAGAAGCAGCCATGAAAGCCGCAGACAGTATTGGGTACCCTGTGATGGTCCGTGCTGCTTATGCACTTGGGGGACTGGGATCAGGCTTGTGTGAAGATGAGAAAAAGTTAAGAGAAGTTTCCACCCAGGCACTGGCATTGTCAAATCAGATTTTGATAGAGAAGTCGCTCTTAGGGTGGAAAGAGATTGAATATGAAGTCGTCCGAGATGCGGCAGACAACTGTATCACAGTTTGCAATATGGAGAATTTTGATCCCCTTGGAGTTCATACAGGTGATTCCATTGTCGTAGCACCAAGTCAAACTCTTTCTAACCAGGAATATCACATGCTGCGAGAAACTGCACTCAAGGTTGTGCGCCATCTTGGCATCATTGGTGAATGTAACATTCAGTATGCTCTGCATCCGTCATCTCTGGAGTATTGCATCATTGAAGTCAATGCTCGTTTGTCCAGAAGCTCAGCTTTGGCTTCCAAAGCAACAGGATATCCTCTGGCGTTCATTGCTGCAAAGCTTGCTCTCGGAATACAGCTCCCCGACATAAAGAACTCCACAACACAACAGACAACTGCCTGTTTTGAACCTAGTTTGGATTATATTGTGACCAAGATTCCTCGATGGGACCTTGACCGTTTCCAGATGACGTCCAAACAGATTGGCAGTTCAATGAAGAGTGTTGGAGAGGTGATGGCGATTGGTCGAACATTCGAAGAGAGCTTCCAGAAGGCATTACGAATGGTGCATCCTTCTGTGGATGGATTTGTGCCAAAGCTTCCCAGCATGCACCAGGAGTTGTCCGAATGCAAACTTGAGGACGAGCTTGTCGTTCCATCAAACACCAGAGTCTATTCCATCGCAAAGGCCTTGCACGAAGACTACACCGTAGATCAAATACACGAACTGACGAGTATAGATCGGTGGTTCTTACACAAACTGCATCGTATTGTGGATATTGAAAGGGACTTAAAGAATCAGAGTTTGGGCTCTCTTCCAGCAGAAGATTTGCTTGAAGCTAAGCAAGCTGGATTTTCTGACAGACAGCTTGCTAAGTTGATTGGAGGTCAAGAGACTGATATGAGGAATGAGAGAATTAAGCATGGAGTCAAGCCCTGGGTCAAACAGATTGATACAATGGCAGCGGAGTATCCAGCCAAGACCAACTATCTTTACATGACGTATAACGGCCAGGAGCATGATCTTGTCTTTGATGATCAAGGTGTCATGGTGCTTGGCTGTGGTCCGTATCACATTGGTAGCAGTGTGGAGTTTGACTGGTGCGCTGTTTCCTGTATCAGGACACTTAGAAACTTAGGAATCAAAACGGTGGTTGTGAATCACAACCCAGAGACCGTCAGCACCGATTACGATGAATGTGATCGTCTTTACTTTGAGGAGCTCTCCCTTGAAAGAGTCTTGGACATCTATCAACAAGAGGTTTGCAAAGGAGCCGTCATCTCTGTCGGTGGTCAGATACCCAATAACTTAGCTCTCCCATTGCACCTGAATGATGTGAAGATATTGGGTACGTCTCCTCTCATGATTGACGCTGCTGAAGAAAGATCTCGTTTTTCCGCCATTCTTGATGAAATTGGTGTCGGGCAGGCACCATGGAGAGCTGTTTCATCtgtgGACGACGCTCTGAATTTCGCTGCAACTGTTGGATATCCCTGCCTTCTGAGGCCTTCATATGTTCTGAGTGGCTCAGCCATGAATGTGGCGTATGGTCCAGTGGAGTTGAAGAAGTTTTTGGGTGAAGCGGCAAGAGTATCCCAGGACCATCCCGTTGTCATGACAAAGTTCATTGAAGGCGCTCGAGAAATTGAAATGGATGCTGTGGCTAAGAATGGAAAGGTTGTTGCGCACGCTATTTCGGAGCATGTTGAGAATGCTGGAGTTCACTCTGGTGACGCTACACTGATCTTACCGCCACAAACCATCAGCGAAGAGGATATTTCAGAGGTGATTGAGTGCAATCTGCGTGCATCTCGATCTTTCCCTTTCGTCTCCAAGACGGTTGGTACTGATTTTATTGATGTAGCTACCAGGGTTATGGTCAACTATCCTCTTGATGAGCATAATTTGCCCCACTTGGACACGCCCTTACAGCCATCTGGATATGTCGGCATTAAGGCGCCCATGTTTTCGTGGCCTCGTCTTCGTGACGCCGATCCTTTGCTCAGATGTGAAATGGCTTCCACTGGCGAGGTCGCATGTTTCGGCGCTAATGTCGACGAAGCTTTTCTGAAGGCCTTGATGTCAACTGGCTTCCGTCTGCCTAAGAAGGGCATTCTTCTTGGTATTCAGCAATCTTTGCAACCAAAGTTTCTACCAACGGCGAACAAACTTCACCAGCTTGGATTTAATCTGTACGCAACCGAAGCCACTTCACAGTACCTCAATGAGCACAATATCCCAGCTCAGACAGTGGAATGGCCACTCCACAGCGCCGGAATCAATTCGACAGCAACAAGATTGATTCAAGAAAAAGAAGTGGATCTTGTAATTAATCTTCCCAATCAAAACACGAAATACATCAAGGATAACTACCTTATAAGGAGAGCTTCAATAGACTGCGGTGTTCCGCTGATCACAAACTTGGAGGTAAGTTCAATGCAACTGTGCGGTTTTGGTCACCAACTAAGTGGTGGcaatgatgaggatgatgatgatgatgaaatggCAGAAACGGGACTGATAGTTGCTGATACTCCGCAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31327	Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Homo sapiens OX=9606 GN=CPS1 PE=1 SV=2
P07756	Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Rattus norvegicus OX=10116 GN=Cps1 PE=1 SV=1
Q8C196	Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Mus musculus OX=10090 GN=Cps1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001107 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02787 all species →	CPSase_L_D3	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	Domain	Interproscan
PF00117 all species →	GATase	Glutamine amidotransferase class-I	Domain	Interproscan
PF02142 all species →	MGS	MGS-like domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005480 all species →	Domain	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	Interproscan
IPR006275 all species →	Family	Carbamoyl-phosphate synthase, large subunit	Interproscan
IPR036897 all species →	Homologous_superfamily	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR011607 all species →	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR017926 all species →	Domain	Glutamine amidotransferase	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR005483 all species →	Domain	Carbamoyl-phosphate synthase large subunit, CPSase domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR036914 all species →	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11405 all species →	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004088 all species →	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006541 all species →	Biological Process	glutamine metabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g27942.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.