Gene detail

Detailed information of g27968.t1 in Montipora capitata

Genomic Location: xfSc0000079:55082...58928
NR annotation: XP_044174791.1, recombining binding protein suppressor of hairless-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31266	Recombining binding protein suppressor of hairless OS=Mus musculus OX=10090 GN=Rbpj PE=1 SV=1
Q91880	Suppressor of hairless protein homolog OS=Xenopus laevis OX=8355 GN=rbpj PE=1 SV=1
Q5RFK6	Recombining binding protein suppressor of hairless OS=Pongo abelii OX=9601 GN=RBPJ PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003006 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09271 all species →	LAG1-DNAbind	LAG1, DNA binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015351 all species →	Domain	RBP-J/Cbf11/Cbf12, DNA binding	Interproscan
IPR037095 all species →	Homologous_superfamily	RBP-J/Cbf11, DNA binding domain superfamily	Interproscan
IPR040159 all species →	Family	Suppressor of hairless-like	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10665 all species →	RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g27968.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.