Gene detail

Detailed information of g27986.t1 in Montipora capitata

Genomic Location: xfSc0000083:45724...52108
NR annotation: XP_015777490.1, PREDICTED: acyl-CoA synthetase family member 4-like [Acropora digitifera]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g27986.t1

atggaagttgaaacactttattctgtgtttgagaaatctgctctttcttttccaatgaatatcgccattactttcaattctgggccgatccaacaacactcaacttatcaggaagtagataagcaagcatccagaattgcagactatttaggctcacggtttgacaagcagaatgtaatagcagtttacgcaaagcaatcaattgaacttgtcgcctgcttacttggaatattaaaacatggaagttgcttcgcaccaattggtcttaattggccaccaggcgttgtctgcaggtttttgtcaaagcttagtgttagtgagattctcgtcgacaaaacgttagtggagaatttgcagaagcacatgactgaatgggaccacaatcaaccaagtcatggatacaagtttgaatttatcgtaaatgaagcggttcatgccaacggatttacacttttgagaaaacaaccaagcatttcagtagaagcagagaagattaattcactggatcttgcttatataatgcaaagttctggtacgactggggagccgaaagcggtgaaagtgcctcattgctgtattgtaccaaacatagcagatatagggaaaagatttcaagtatcaccagatgatgtggtttttttagcatcaccctacacctttgacccttttgttgtacagatgttcgtcacattttctgtgggggccagacttgtcatggttcctgactctgtgaaaatggttccatcgaagttgtgtgagattctctttgatgtggaaaaagtcactgtccttcagccaacaccttccttgatgcactactttggagaagagctcatcaagtcaaaagttcttaatgtccattcctcactcagagtgcttgcatttggaggagaatgttgtcccacactgtccaccttgagaaaatggaggcctccaagcagcaacaccttgatttacaatctttatggcattactgaggtgtcctgttgggcttcatgctatcccattcccataaaacagttggtgaataacagatgcagtttaagtgatggtgattcctttgatgaaatgcctggggatattcctgttgatcttgcaaatgatatcccagttggtcctcccctgttggatacagtcatggaagttcgaggtgaaagtggaagccttgttcaagagggcatggggcagatttacataggtggctcagatcgcgtgtgtcttcttggtgacgaaaggtctcttgtcaagggaatgatgagagcgacaggagactgggcctttgttaaggacagttgcatttggttttgcgggagaaacgatcggcagatcaaacgtatggggaaaagaataaacctagattctattgaacgggaaatttctgaactactcccaagcaaggcatgttcactggttttagagaaagtgaacaacaatcactctagaattcatttgtttgtggttggcaaatattcgtcagacaagaaaaatgatgtgatgtctttgaggcgtgacttagtcaaactgctaccacatgaggcgcagcctgattgtattcacatggtttctcatttgccaatgacagcccatggaaaggttaatagggctgccttgttgaccatccttcagaaaatttctgactctcctgggacaagatctgtgagagaatttcttgaacttgcttggaaagaaagtttgctcatttatgatgaaagcaaaacaccttcgtttcttggaaaacatcttgaaaatcatgacgctgagaatgtaatggaagatgacatgttccttgcctgtggtggatcttctttgagtgctgtgaggcttgcagatttaattgagtcttggatatgtaaccaaggaaaagttcatgtggagcttcatgagttattagataatattttcaacaaaacttttggttccctttgtatctatgttgagagtaagctttctagaatgcttactgaggctagaggtgattctaacaacagaccacttcaagggaacttaagtgacagccgaagagatgacttaagaacaattgcgggtcaaaatatcctggacgcacagatatctcttgaatccaactcaacattgggtgaaactggcataaccgaagctttgccaaaacgaaagctgttggctattgctgatggaagctctcacctaaatgagaataatggcatagccagtgtgaagagatttgcaatgaaaaacccaccttccattgaaaacaataattcatatcataatgagatgaccagttccaaagaggctagaaactgcttttgttctgttcgaagatgcaaccaatataatttttgtgaggtttgcagaaatttcaaactcactgaaaatgataatgcagtgagacaaacacaaacattcggacctgatcaaaagggagaccggtatcactttgtatcttgtaatgaggttgaagagaatactcatctgcagtctctctcatcatctattgaaaaggaggctcttggattcaaggttgtcatcacttcccagtggtgcacttgtctgtacaagtgcattgatgcttccccccttgtggttcactcaccgggaaggtgtgagggtgaagttttcattggctcacatggtcacgtgtttatgtgtatccaactgagtggtggcgaagtcctgtgggagaggagggtggaggacagaatagagtcttctgctaccctttcagcatgcggcaaatttgtcatagttggttgctatgatgggaaagtgtatgtattcaaccgttgcactggtgaaactcattggacatttcaaactggtgcagctgtgaaaagctctccttgcatcgacccacagacaggggtggcctggtgtgggtcacatgatcagcatgtgtatgggcttgatgtgataaacaagaaatgcatatgtgctatacattgcggtgggggatcttgcttcagttccccatgcagcagcagcgacctgcatttggtcttcattgcaacactgtccgggcgtgttcttgcaattcataccattgagcatgcaatcgtctggagtcagcagtgtcccaaacccatctttgcatcattgctgttgttgccgacgggaattgcttgtgcatgcgtggatggatgtatttattgttttgattatgaaggaaagagcttatggaagtttgaaacacgtgctccaatgttttgctctcccactttcatggagccggattgtcattcactccgttctggacacgttgtatttggttcccatgacaacaacgtgtactgcttatctccgtgtggcaaattacagtggactttcagcactaatgcacaagtttattcaagccctttcatcgctgaattgaaagtcacaaactgtgacactacttgtcacgcaacgtgtaacgcaacttgcaagaagtgtgattcaactaaagcacggcgcgcggtatttgttgtcactactgtaggaactcttaatgttttagacctttactctggagttcgcttaggtttgtattcattacccggtgaagtattttcttctcctgttgtcgttgataggcggatccttgttggatgccgaaatgactatctctactgtcttgaaattacaactgcataa

Transcript

g27986.t1

ATGGAAGTTGAAACACTTTATTCTGTGTTTGAGAAATCTGCTCTTTCTTTTCCAATGAATATCGCCATTACTTTCAATTCTGGGCCGATCCAACAACACTCAACTTATCAGGAAGTAGATAAGCAAGCATCCAGAATTGCAGACTATTTAGGCTCACGGTTTGACAAGCAGAATGTAATAGCAGTTTACGCAAAGCAATCAATTGAACTTGTCGCCTGCTTACTTGGAATATTAAAACATGGAAGTTGCTTCGCACCAATTGGTCTTAATTGGCCACCAGGCGTTGTCTGCAGGTTTTTGTCAAAGCTTAGTGTTAGTGAGATTCTCGTCGACAAAACGTTAGTGGAGAATTTGCAGAAGCACATGACTGAATGGGACCACAATCAACCAAGTCATGGATACAAGTTTGAATTTATCGTAAATGAAGCGGTTCATGCCAACGGATTTACACTTTTGAGAAAACAACCAAGCATTTCAGTAGAAGCAGAGAAGATTAATTCACTGGATCTTGCTTATATAATGCAAAGTTCTGGTACGACTGGGGAGCCGAAAGCGGTGAAAGTGCCTCATTGCTGTATTGTACCAAACATAGCAGATATAGGGAAAAGATTTCAAGTATCACCAGATGATGTGGTTTTTTTAGCATCACCCTACACCTTTGACCCTTTTGTTGTACAGATGTTCGTCACATTTTCTGTGGGGGCCAGACTTGTCATGGTTCCTGACTCTGTGAAAATGGTTCCATCGAAGTTGTGTGAGATTCTCTTTGATGTGGAAAAAGTCACTGTCCTTCAGCCAACACCTTCCTTGATGCACTACTTTGGAGAAGAGCTCATCAAGTCAAAAGTTCTTAATGTCCATTCCTCACTCAGAGTGCTTGCATTTGGAGGAGAATGTTGTCCCACACTGTCCACCTTGAGAAAATGGAGGCCTCCAAGCAGCAACACCTTGATTTACAATCTTTATGGCATTACTGAGGTGTCCTGTTGGGCTTCATGCTATCCCATTCCCATAAAACAGTTGGTGAATAACAGATGCAGTTTAAGTGATGGTGATTCCTTTGATGAAATGCCTGGGGATATTCCTGTTGATCTTGCAAATGATATCCCAGTTGGTCCTCCCCTGTTGGATACAGTCATGGAAGTTCGAGGTGAAAGTGGAAGCCTTGTTCAAGAGGGCATGGGGCAGATTTACATAGGTGGCTCAGATCGCGTGTGTCTTCTTGGTGACGAAAGGTCTCTTGTCAAGGGAATGATGAGAGCGACAGGAGACTGGGCCTTTGTTAAGGACAGTTGCATTTGGTTTTGCGGGAGAAACGATCGGCAGATCAAACGTATGGGGAAAAGAATAAACCTAGATTCTATTGAACGGGAAATTTCTGAACTACTCCCAAGCAAGGCATGTTCACTGGTTTTAGAGAAAGTGAACAACAATCACTCTAGAATTCATTTGTTTGTGGTTGGCAAATATTCGTCAGACAAGAAAAATGATGTGATGTCTTTGAGGCGTGACTTAGTCAAACTGCTACCACATGAGGCGCAGCCTGATTGTATTCACATGGTTTCTCATTTGCCAATGACAGCCCATGGAAAGGTTAATAGGGCTGCCTTGTTGACCATCCTTCAGAAAATTTCTGACTCTCCTGGGACAAGATCTGTGAGAGAATTTCTTGAACTTGCTTGGAAAGAAAGTTTGCTCATTTATGATGAAAGCAAAACACCTTCGTTTCTTGGAAAACATCTTGAAAATCATGACGCTGAGAATGTAATGGAAGATGACATGTTCCTTGCCTGTGGTGGATCTTCTTTGAGTGCTGTGAGGCTTGCAGATTTAATTGAGTCTTGGATATGTAACCAAGGAAAAGTTCATGTGGAGCTTCATGAGTTATTAGATAATATTTTCAACAAAACTTTTGGTTCCCTTTGTATCTATGTTGAGAGTAAGCTTTCTAGAATGCTTACTGAGGCTAGAGGTGATTCTAACAACAGACCACTTCAAGGGAACTTAAGTGACAGCCGAAGAGATGACTTAAGAACAATTGCGGGTCAAAATATCCTGGACGCACAGATATCTCTTGAATCCAACTCAACATTGGGTGAAACTGGCATAACCGAAGCTTTGCCAAAACGAAAGCTGTTGGCTATTGCTGATGGAAGCTCTCACCTAAATGAGAATAATGGCATAGCCAGTGTGAAGAGATTTGCAATGAAAAACCCACCTTccattgaaaacaataattCATATCATAATGAGATGACCAGTTCCAAAGAGGCTAGAAACTGCTTTTGTTCTGTTCGAAGATGCAACCAATATAATTTTTGTGAGGTTTGCAGAAATTTCAAACTCACTGAAAATGATAATGCAGTGAGACAAACACAAACATTCGGACCTGATCAAAAGGGAGACCGGTATCACTTTGTATCTTGTAATGAGGTTGAAGAGAATACTCATCTGCAGTCTCTCTCATCATCTATTGAAAAGGAGGCTCTTGGATTCAAGGTTGTCATCACTTCCCAGTGGTGCACTTGTCTGTACAAGTGCATTGATGCTTCCCCCCTTGTGGTTCACTCACCGGGAAGGTGTGAGGGTGAAGTTTTCATTGGCTCACATGGTCACGTGTTTATGTGTATCCAACTGAGTGGTGGCGAAGTCCTGTGGGAGAGGAGGGTGGAGGACAGAATAGAGTCTTCTGCTACCCTTTCAGCATGCGGCAAATTTGTCATAGTTGGTTGCTATGATGGGAAAGTGTATGTATTCAACCGTTGCACTGGTGAAACTCATTGGACATTTCAAACTGGTGCAGCTGTGAAAAGCTCTCCTTGCATCGACCCACAGACAGGGGTGGCCTGGTGTGGGTCACATGATCAGCATGTGTATGGGCTTGATGTGATAAACAAGAAATGCATATGTGCTATACATTGCGGTGGGGGATCTTGCTTCAGTTCCCCATGCAGCAGCAGCGACCTGCATTTGGTCTTCATTGCAACACTGTCCGGGCGTGTTCTTGCAATTCATACCATTGAGCATGCAATCGTCTGGAGTCAGCAGTGTCCCAAACCCATCTTTGCATCATTGCTGTTGTTGCCGACGGGAATTGCTTGTGCATGCGTGGATggatgtatttattgttttgatTATGAAGGAAAGAGCTTATGGAAGTTTGAAACACGTGCTCCAATGTTTTGCTCTCCCACTTTCATGGAGCCGGATTGTCATTCACTCCGTTCTGGACACGTTGTATTTGGTTCCCATGACAACAACGTGTACTGCTTATCTCCGTGTGGCAAATTACAGTGGACTTTCAGCACTAATGCACAAGTTTATTCAAGCCCTTTCATCGCTGAATTGAAAGTCACAAACTGTGACACTACTTGTCACGCAACGTGTAACGCAACTTGCAAGAAGTGTGATTCAACTAAAGCACGGCGCGCGGTATTTGTTGTCACTACTGTAGGAACTCTTAATGTTTTAGACCTTTACTCTGGAGTTCGCTTAGGTTTGTATTCATTACCCGGTGAAGTATTTTCTTCTCCTGTTGTCGTTGATAGGCGGATCCTTGTTGGATGCCGAAATGACTATCTCTACTGTCTTGAAATTACAACTGCATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4L235	Beta-alanine-activating enzyme OS=Homo sapiens OX=9606 GN=AASDH PE=1 SV=3
Q5RG49	Beta-alanine-activating enzyme OS=Danio rerio OX=7955 GN=aasdh PE=3 SV=1
Q80WC9	Beta-alanine-activating enzyme OS=Mus musculus OX=10090 GN=Aasdh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004449 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF13570 all species →	PQQ_3	PQQ-like domain	Repeat	Interproscan
PF01011 all species →	PQQ	PQQ enzyme repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR002372 all species →	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR052091 all species →	Family	Beta-alanine Activation and Resistance	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR018391 all species →	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR006162 all species →	PTM	Phosphopantetheine attachment site	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44394 all species →	BETA-ALANINE-ACTIVATING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0043041 all species →	Biological Process	amino acid activation for nonribosomal peptide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00142	AASDH; acyl-CoA synthetase	EC:6.2.1.-	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.