Detailed information of g28.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_097279589.1, penicillin-binding protein 2 [Caenispirillum bisanense]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
A0A0H3C7V4Cell shape-determining protein MreB OS=Caulobacter vibrioides (strain NA1000 / CB15N) OX=565050 GN=mreB PE=1 SV=1
P0A9X5Cell shape-determining protein MreB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=mreB PE=3 SV=1
P0A9X4Cell shape-determining protein MreB OS=Escherichia coli (strain K12) OX=83333 GN=mreB PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00665rveIntegrase core domainDomainInterproscan
PF03953Tubulin_CTubulin C-terminal domainDomainInterproscan
PF00091TubulinTubulin/FtsZ family, GTPase domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF18199Dynein_CDynein heavy chain C-terminal domainDomainInterproscan
PF18198AAA_lid_11Dynein heavy chain AAA lid domainDomainInterproscan
PF03028Dynein_heavyDynein heavy chain region D6 P-loop domain DomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF06723MreB_MblMreB/Mbl proteinFamilyInterproscan
PF03717PBP_dimerPenicillin-binding Protein dimerisation domainDomainInterproscan
PF00905TranspeptidasePenicillin binding protein transpeptidase domainDomainInterproscan
PF00153Mito_carrMitochondrial carrier proteinRepeatInterproscan
PF00643zf-B_boxB-box zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR003582DomainShKT domainInterproscan
IPR000217FamilyTubulinInterproscan
IPR008280Homologous_superfamilyTubulin/FtsZ, C-terminalInterproscan
IPR002452FamilyAlpha tubulinInterproscan
IPR036525Homologous_superfamilyTubulin/FtsZ, GTPase domain superfamilyInterproscan
IPR018316DomainTubulin/FtsZ, 2-layer sandwich domainInterproscan
IPR037103Homologous_superfamilyTubulin/FtsZ-like, C-terminal domainInterproscan
IPR003008DomainTubulin/FtsZ, GTPase domainInterproscan
IPR017975Conserved_siteTubulin, conserved siteInterproscan
IPR023123Homologous_superfamilyTubulin, C-terminalInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR041228DomainDynein heavy chain, C-terminal domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR041658DomainDynein heavy chain AAA lid domainInterproscan
IPR004273DomainDynein heavy chain region D6 P-loop domainInterproscan
IPR026983FamilyDynein heavy chainInterproscan
IPR042219Homologous_superfamilyDynein heavy chain AAA lid domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR039085FamilyDDB1- and CUL4-associated factor 10Interproscan
IPR050515FamilyBacterial Transpeptidases and Beta-LactamasesInterproscan
IPR004753FamilyCell shape determining protein MreBInterproscan
IPR036138Homologous_superfamilyPenicillin-binding protein, dimerisation domain superfamilyInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR012338Homologous_superfamilyBeta-lactamase/transpeptidase-likeInterproscan
IPR005311DomainPenicillin-binding protein, dimerisation domainInterproscan
IPR001460DomainPenicillin-binding protein, transpeptidaseInterproscan
IPR017790FamilyPenicillin-binding protein 2Interproscan
IPR002067FamilyMitochondrial carrier proteinInterproscan
IPR023395Homologous_superfamilyMitochondrial carrier domain superfamilyInterproscan
IPR049562FamilySolute carrier family 25 member 33/36-likeInterproscan
IPR018108RepeatMitochondrial substrate/solute carrierInterproscan
IPR053003FamilyTRIM/RBCC E3 ubiquitin-protein ligasesInterproscan
IPR000315DomainB-box-type zinc fingerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR11588TUBULINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR46961DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEINInterproscan
PTHR14588DDB1- AND CUL4-ASSOCIATED FACTOR 10Interproscan
PTHR30627PEPTIDOGLYCAN D,D-TRANSPEPTIDASEInterproscan
PTHR45829MITOCHONDRIAL CARRIER PROTEIN RIM2Interproscan
PTHR36754E3 UBIQUITIN-PROTEIN LIGASE TRIM37Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005874Cellular ComponentmicrotubuleInterproscan
GO:0007017Biological Processmicrotubule-based processInterproscan
GO:0005200Molecular Functionstructural constituent of cytoskeletonInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0000226Biological Processmicrotubule cytoskeleton organizationInterproscan
GO:0000278Biological Processmitotic cell cycleInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0008569Molecular Functionminus-end-directed microtubule motor activityInterproscan
GO:0030286Cellular Componentdynein complexInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan
GO:0051959Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0080008Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0008658Molecular Functionpenicillin bindingInterproscan
GO:0071555Biological Processcell wall organizationInterproscan
GO:0071972Molecular Functionpeptidoglycan L,D-transpeptidase activityInterproscan
GO:0000902Biological Processcell morphogenesisInterproscan
GO:0009002Molecular Functionserine-type D-Ala-D-Ala carboxypeptidase activityInterproscan
GO:0009252Biological Processpeptidoglycan biosynthetic processInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0000002Biological Processmitochondrial genome maintenanceInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0015218Molecular Functionpyrimidine nucleotide transmembrane transporter activityInterproscan
GO:1990519Biological Processpyrimidine nucleotide import into mitochondrionInterproscan
GO:0005164Molecular Functiontumor necrosis factor receptor bindingInterproscan
GO:0005777Cellular ComponentperoxisomeInterproscan
GO:0016235Cellular ComponentaggresomeInterproscan
GO:0031625Molecular Functionubiquitin protein ligase bindingInterproscan
GO:0032088Biological Processnegative regulation of NF-kappaB transcription factor activityInterproscan
GO:0046600Biological Processnegative regulation of centriole replicationInterproscan
GO:0051092Biological Processpositive regulation of NF-kappaB transcription factor activityInterproscan
GO:0051865Biological Processprotein autoubiquitinationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K26159PRKRIP1; PRKR-interacting protein 1-Peptidoglycan biosynthesis and degradation proteinsko01011deepkoala
Transportersko02000deepkoala
Exosomeko04147deepkoala
Spliceosomeko03041deepkoala

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