Gene detail

Detailed information of g28018.t1 in Montipora capitata

Genomic Location: xfSc0000087:24728...50890
NR annotation: XP_029196420.2, alpha-mannosidase 2-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g28018.t1

atgaagaagaaaatagaagaacctttgaatgatctggaaaaggacatgaatcaactggaaggtaaccttggcaggtctgggaaaattatgagcaatatgctcaagacggttgacaaaataagatttcatgacaaggaactaagtgacactaaggaacaacacaaagattctgttaccaatcgacgaaatgaaggacagactgctggggttgatgatggttgtgtattctcagggacagcttctggaaaatctgcaaatgtcaagatgctggatatgtttgatatcatgccatttgatgatatcgatggtggtgcatggaagcaaggatgggatgtgcagtatgatgacaaatcatttgacgatgagcctctcaatgtctttgtggtgcctcactctcacaatgaccctggctggatcaagacactagatgattactacaaccaacagactcgacatattttggataatgtggttgatgctttggatattgatgaaaagagaaaatttatttgggcagaaatatcatatttctcgatgtggtgggcagacactgatgaacgaagaaagaggcttgcccttgaccagttatcaaaggggcagttagaaatcgtcacgggtggctgggttatgaatgatgaagccaacacccattactatgccatgctagaccaacttattgaaggccatcagtggattgcaaaatttctaggaacaggaataaagcctatgtcagggtgggccattgatccatttggacatacacccacaatggcttaccttctcaaaagaatgggtttccattctatgttaattcagcggactcattatcaagtgaagaaacatcttgctaaagacaaaaatctagaattcatgtggcggcaaaactgggaccatgaatcatcaacagatatgttttgtcacatgatgccattttacagttatgacattcctcacacatgtggccctgacccaaagacatgctgtcagtttgacttccgtcgcttgccaggtggtggcatcacatgtccgtggagaatcccaccccaaagaattgataacaacaatgttgcacaaaggtctagaatgcttgtggatcagtacaagaaaaaagcacaactatacaggaccaaggttttatttgtacccctgggtgatgattttcgatatgaaactacatttgacactcacgagcagttcagtaattatcaggtgcaatttggcactctaagtgattattttaatgcgctgtacaaggccacagatgcggaacctggaagtcagcctaaagattttccagccctgtctggcgacttttacacatatgctgatagggaagatcactattggagcggttactacacgtcacgcccattttacaagaacatggatagagcattggagtcgcaccacagggctgctgaaataatcttctccctagctgaagcacgcgcacggcatcatggcacctctagttttcctttggatcagttgtatggtctgttgacaaaagcgcgtcgaaacttgggtttatttcagcaccacgatggcatcactggaacagccaaggactttgtggtcgtagattatggacaaagaatgcttcaatccctgaatgatgtacaacaagtaatacaggactctgcccagcttttgttgacgaatgacaagtcagtttacaagccaccggaccccgtgcttcctcctctgaaatttgaagagtacagactagcacatgacgcattgccaaccaaagaggtcataacactctccgacactccgagagcagtagtattttacaattctttaacaacgacaagagaacaggtggtcagccttcacatttctgatccagaagtaatggtcagtgacagtgatgggaaagaaattccatgtcaagtgaatgtctggtgggatcacagaaatagaatatcaaccgcaaagtatgaggttatatttgtggccgaagttcaagcccttggtcttaccacgtattttgtgtcgtcaggccttgggtccaagctgagcgaacgttcttctatcacaacatacaattctcaggtgtcccaagacttagggggaaaatttcaagttaaaaccaagacatcgggaaaagaaaatattttgttggaaaatgatgctatcagacttgaacttgacagtgtcagaggacttttaaagactatcacacaaaaggaaaagggaactgtgacagaagcagccattgattttgctacgtacggtacaaagccctcaggggacaggagtggagcatatctgtttcttccagatgggccagctcagatgcaagaggtgcgtgttgctcttcctaacgttgttcatgtggtgcgaatttattcagtttcggcccaatatgcggttgatatggcttttatatcggccgtcccttgtcatgacgatgacacggtagtcgcttcttttatggcagggccagaagggcggactgtggagatccaaaacaaagtggacataaaaaatctagtcaacaaggagctggtgatgagaatcaagagcaatataaagaacagtaatcgagagttttacaccgacttgaacgggttccagatgcaaaagcgtaaaacaatggataaaattcccatccaagccaatttttatcctcttccctccatggcattcctccaggataagtccactcgattaactctcctttctgcacagccgaatggtgtggctggtcttcatcaaggtgaattccaggtggttcttgatcgacgtctttaccaggatgacaacagaggcttgggtcagggagttactgacaacaaggttactcctgccaactttaggcttctagtggaggaatttaaaactgaacacgaacccgtaagtacagtggtttga

Transcript

g28018.t1

atgaAGAAGAAAATAGAAGAACCTTTGAATGATCTGGAAAAGGACATGAATCAACTGGAAGGTAACCTTGGCAGGTCTGGGAAAATTATGAGCAATATGCTCAAGACGGTTGACAAAATAAGATTTCATGACAAGGAACTAAGTGACACTAAGGAACAACACAAAGATTCTGTTACCAATCGACGAAATGAAGGACAGACTGCTGGGGTTGATGATGGTTGTGTATTCTCAGGGACAGCTTCTGGAAAATCTGCAAATGTCAAGATGCTGGATATGTTTGATATCATGCCATTTGATGATATCGATGGTGGTGCATGGAAGCAAGGATGGGATGTGCAGTATGATGACAAATCATTTGACGATGAGCCTCTCAATGTCTTTGTGGTGCCTCACTCTCACAATGACCCTGGCTGGATCAAGACACTAGATGATTACTACAACCAACAGACTCGACATATTTTGGATAATGTGGTTGATGCTTTGGATAttgatgaaaagagaaaatttatTTGGGCAGAAATATCATATTTCTCGATGTGGTGGGCAGACACTGATGAACGAAGAAAGAGGCTTGCCCTTGACCAGTTATCAAAGGGGCAGTTAGAAATCGTCACGGGTGGCTGGGTTATGAATGATGAAGCCAACACCCATTACTATGCCATGCTAGACCAACTTATTGAAGGCCATCAGTGGATTGCAAAATTTCTAGGAACAGGAATAAAGCCTATGTCAGGGTGGGCCATTGATCCATTTGGACATACACCCACAATGGCTTACCTTCTCAAAAGAATGGGTTTCCATTCTATGTTAATTCAGCGGACTCATTATCAAGTGAAGAAACATCTTGCTAAAGACAAAAATCTAGAATTCATGTGGCGGCAAAACTGGGACCATGAATCATCAACAGATATGTTTTGTCACATGatgccattttacagttatgaCATTCCTCACACATGTGGCCCTGACCCAAAGACATGCTGTCAGTTTGACTTCCGTCGCTTGCCAGGTGGTGGCATCACATGTCCGTGGAGAATCCCACCCCAAAGAATTGATAACAACAATGTTGCACAAAGGTCTAGAATGCTTGTGGATCAGTACAAGAAAAAAGCACAACTATACAGGACCAAGGTTTTATTTGTACCCCTGGGTGATGATTTTCGATATGAAACTACATTTGACACTCACGAGCAGTTCAGTAATTATCAGGTGCAATTTGGCACTCTAAGTGATTATTTTAATGCGCTGTACAAGGCCACAGATGCGGAACCTGGAAGTCAGCCTAAAGATTTTCCAGCCCTGTCTGGCGACTTTTACACATATGCTGATAGGGAAGATCACTATTGGAGCGGTTACTACACGTCACGCCCATTTTACAAGAACATGGATAGAGCATTGGAGTCGCACCACAGGGCTGCTGAAATAATCTTCTCCCTAGCTGAAGCACGCGCACGGCATCATGGCACCTCTAGTTTTCCTTTGGATCAGTTGTATGGTCTGTTGACAAAAGCGCGTCGAAACTTGGGTTTATTTCAGCACCACGATGGCATCACTGGAACAGCCAAGGACTTTGTGGTCGTAGATTATGGACAAAGAATGCTTCAATCCCTGAATGATGTACaacaagtaatacaggactctgcCCAGCTTTTGTTGACGAATGACAAGTCAGTTTACAAGCCACCGGACCCCGTGCTTCCTCCTCTGAAATTTGAAGAGTACAGACTAGCACATGACGCATTGCCAACCAAAGAGGTCATAACACTCTCCGACACTCCGAGAGCAGTAGTATTTTACAATTCTTTAACAACGACAAGAGAACAGGTGGTCAGCCTTCACATTTCTGATCCAGAAGTAATGGTCAGTGACAGTGATGGGAAAGAAATTCCATGTCAAGTGAATGTCTGGTGGGATCACAGAAATAGAATATCAACCGCAAAGTATGAGGTTATATTTGTGGCCGAAGTTCAAGCCCTTGGTCTTACCACGTATTTTGTGTCGTCAGGCCTTGGGTCCAAGCTGAGCGAACGTTCTTCTATCACAACATACAATTCTCAGGTGTCCCAAGACTTAGGGGGAAAATTTCAAGTTAAAACCAAGACATCgggaaaagaaaatattttgttgGAAAATGATGCTATCAGACTTGAACTTGACAGTGTCAGAGGACTTTTAAAGACTATCACACAAAAGGAAAAGGGAACTGTGACAGAAGCAGCCATTGATTTTGCTACGTACGGTACAAAGCCCTCAGGGGACAGGAGTGGAGCATATCTGTTTCTTCCAGATGGGCCAGCTCAGatgcAAGAGGTGCGTGTTGCTCTTCCTAACGTTGTTCATGTGGTGCGAATTTATTCAGTTTCGGCCCAATATGCGGTTGATATGGCTTTTATATCGGCCGTCCCTTGTCATGACGATGACACGGTAGTCGCTTCTTTTATGGCAGGGCCAGAAGGGCGGACTGTGGAGATCCAAAACAAAGTGGACATAAAAAATCTAGTCAACAAGGAGCTGGTGATGAGAATCAAGAGCAATATAAAGAACAGTAATCGAGAGTTTTACACCGACTTGAACGGGTTCCAGATGCAAAAGCGTAAAACAATGGATAAAATTCCCATCCAAGCCAATTTTTATCCTCTTCCCTCCATGGCATTCCTCCAGGATAAGTCCACTCGATTAACTCTCCTTTCTGCACAGCCGAATGGTGTGGCTGGTCTTCATCAAGGTGAATTCCAGGTGGTTCTTGATCGACGTCTTTACCAGGATGACAACAGAGGCTTGGGTCAGGGAGTTACTGACAACAAGGTTACTCCTGCCAACTTTAGGCTTCTAGTGGAGGAATTTAAAACTGAACACGAACCCGTAAGTACAGTGGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16706	Alpha-mannosidase 2 OS=Homo sapiens OX=9606 GN=MAN2A1 PE=1 SV=2
P27046	Alpha-mannosidase 2 OS=Mus musculus OX=10090 GN=Man2a1 PE=1 SV=2
P28494	Alpha-mannosidase 2 OS=Rattus norvegicus OX=10116 GN=Man2a1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004090 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09261 all species →	Alpha-mann_mid	Alpha mannosidase middle domain	Domain	Interproscan
PF01074 all species →	Glyco_hydro_38N	Glycosyl hydrolases family 38 N-terminal domain	Domain	Interproscan
PF07748 all species →	Glyco_hydro_38C	Glycosyl hydrolases family 38 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015341 all species →	Domain	Glycoside hydrolase family 38, central domain	Interproscan
IPR000602 all species →	Domain	Glycoside hydrolase family 38, N-terminal domain	Interproscan
IPR050843 all species →	Family	Glycosyl Hydrolase Family 38	Interproscan
IPR037094 all species →	Homologous_superfamily	Glycoside hydrolase family 38, central domain superfamily	Interproscan
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR028995 all species →	Homologous_superfamily	Glycoside hydrolase families 57/38, central domain superfamily	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR011682 all species →	Domain	Glycosyl hydrolase family 38, C-terminal	Interproscan
IPR027291 all species →	Homologous_superfamily	Glycoside hydrolase 38, N-terminal domain superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11607 all species →	ALPHA-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0006013 all species →	Biological Process	mannose metabolic process	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0006491 all species →	Biological Process	N-glycan processing	Interproscan
GO:0006517 all species →	Biological Process	protein deglycosylation	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g28018.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g28018.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

3Conditions

22.1Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	18	7.92	22.06
whole organisms · low pH treatment	15	14	6.07	15.10
whole organisms · extra low pH treatment pH treatment	12	10	7.04	21.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	22.06
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	18.04
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	17.18
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	16.59
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	16.30
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	12.28
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	10.08
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	10.07
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	8.72
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	6.95
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	6.87
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	6.26
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	5.27
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.82
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.46
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.04
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.19
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	1.08
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	15.10
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	13.36
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	13.26
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	8.61
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	8.17
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	6.63
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	6.50
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	5.83
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	5.54
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.80
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.88
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.69
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.31
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.31
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	21.25
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	17.50
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	15.58
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	6.98
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	6.70
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	5.93
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	5.64
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.49
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.26
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.15
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.