Gene detail

Detailed information of g28119.t1.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: XP_020603827.1, endoribonuclease Dicer homolog 1-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

g28119.t1

ATGCCGAAAGTTTTGATCACTAGGAATGATGAATATGCTCTGGATATCGTCGCGTTCTGTTATACGAAAGGTCCGTTTGCAGGGACGATCAACGCAGAATTATTCACGGAAGAAACGATTTCACCCGGAAACGGGAGTCCCTACGTAACACTATTCAACGGTTATGGAAAGAACCACAAGCACATTGCGTTAGGGAATGTCTACGGTGATTATGAAGCGATATCGCGAAATGGCTTTCAAGAAACAGAGCCACAAGAAACGAGCCCTGAGAGGACTGTTGGTTATGGCAGACCAAGATCTCACGCAAAAAGACTTCATTCTTGGAGTGGTCCCGTGTCTGAAAGCGAAGATAGATTTAACCACGATCATGTCCACTGCACTAAGGCAATTGAGGAAACGGGGCATCACACTGGGATGGACGGGAGAATGGAAAGTCAAGGCTGTTGCATTAGGAAGCAGGACGCAGCTCTACATATTGCTAAACATTTAGAAAATGCCTTCCAGTTGGGTCACCATCCTTCATTTGCGGTCCATTTGGAGTCCCAAGAATGCACAGTGGATACAACCCCTAGAAGATGGTCTGCTGAATTTCGCGATACGGATCTGTCAGCCTTACGAACCAAGAGCATTGTTCCCTCGAAGCCGAAAGCGCGAGTCACTAACCATAGGACAACTACGCGAAGCCATCTTGAAGGTGAAGGTGAGTCCAATAACAAAACACACACCTGCCGAAATGGAGCGCGCCCTGTTATAGCATATGCCCAAAACATGGCTCTTGAGGACGAACCGAAGTATGAAGATCTTCAACAAAGGATCCTTGTTGTATTGAAACGTTATGGACCTTTGGAGTCTATAGATATTGCCAAGGCTCTTAAATGTGAGATAAGGGAGAAGGTAAACCATGCCCTATACTTGCTCAATAGAAAAGGTCTTGTTTGTCCTGCAGTTTCGAGAGATGGCTCAATCATAGCGTGGATGTCAGCCGAGCAGCCTTTTCTTGGATATCGAGCGAACCCAGGAGTGATTGGTGGCGAAAGAAGCAAAGACAAATGTTTTAGAAGAACTTCCTATGAAGAACTCTGTGTGCAGCTAGGGAGGAATTCCCCTGGCGGTGGGTACGATAGTAGGCCAAGACAAGAGCCTCGAGGTGTTGACGGCATGAAGCCATGGATGCGATCCAGTGGGAACAGCCCTCCACTAAGTGAAAGAAGTGCGTCGAGCTATTGCAACGTGTGTGGAATTTCATTCGTGTCGGAGCCGCAATATGAGGAACACCTTCGAAGCACGAAACATCAAAACAAGGTAGCAAAGGTTAGTGCGATTCCATACAAGAAATTCTGCGAGTGTTGCAAAGTGCATCTAAATTCCCAATCGCAAGCCAAAGAGCACTTCAGCAGCGGAAGGCACGAACAAACTGTTGCGAAGTCTCAAAAGGCACCACCTCAGCAACATCTTCCATTGATCACTGTTCCTGAGCAGTCCACTCCACAGCTAAGCACAATAACACAGCCGTACGACTACCAGCTTGAGTTGTACAGCAAGGCAATGAACACAAATGCTGTGTGCTTTCTTCCGACTGGAACTGGCAAAACGCTTGTGGCCTCCTTGGTCATCGCGCACATGCTCAAGTTGAATCCATCTCGGCAAGTGGTCTTCTTAGTCGATCGTGTTCTTCTCGTCCTTCAGCAAAGTGACTATCTTAGAAAGGAACTGTCGAGTGTCCGAGTCGCGGATGAGAGGGGTACTTTCAAAGGTACCAGGCCCGTTCGCATCGGAGCGGTCTGTGGTGAAATGAGGAAGCTTGAAGGGAATGCTCGCATCTATGAGCAGGACGTTCTAATCATAACAGCTGACTGTTATAGAAATCATCTAAATAACGGAACACTTCGCTTCGATGATGTTTCATTGTTAGTTCTTGACGAAGCACATCACTGCAACAAAGACCATCCTTACAATGTCATCATACGAGACTTTTATCTGAGGGAAGATGCTCTTCTCGGTCATCGACCCAAAATCCTGGGACTCGCAGAATCTCTTGCTGGAGAGATCTCTCTGGACAAAACAACCAAGAGATTACAGAGACTCTTAGGGAACCTTGGCGAAGCACAGATGTTGGTTGTCACAGACCATGCGAAAGAACTGGAAAAGAAGACCAACAGAGCTCCACCTGACTGCATCGTTGCTTCATATACCAATTCTGAATGCCAGCTCATGGACATGCTTATGGAATACGCCACCAAAGCATTCAACTTGTCTGTACGATTGAGCGAGATGAAGGACTACAAAGACATCTTTCAGCCATCATCTGGCGGCCATTTTAGCATCGATGACATCTGCCCTGTTCTTGGTGTGATCGATAACATTTTACTTTCTCGCCCCGAATCTAATGCCTTGTATTCGCTGCTGCACTTTCAGCACATCTGCGAGGCTGTGTGCACGCTTCAGGAGTGTGGGGAGCAGATAGCGATGTATCCGATAGCAGAGCTGGCAGACGAGAAGTGTCCTTTCGGGTTTCATTGGGCAGAGAATGCGGGTTTTCCATGCATCAAAGTCAGGTCCTATTTGGAACATCATCTCAGCAAAgGTTGTGTTTCAGAGCTTTGTGGGTTAGATTCAGGAATAGAACAACTGATGAAGCAATTTATGAAAGTAAACTGGACTGAAGTGGACTTGGTTTTGGTACTTGTCAAACGAGCACGTACGGCGCGATACCTGGCTAACTTTCTGTCAAATTGCGGGAGGCTGGTCTCATGGTTACACGGAGTGAGGACCACGTTCTTTGCGAAATATGGATGCGGTTCTACTGATCAAGGAGTGACGCATCCAACGCAAAGAGAGGTGATCTCACGAATTCACGAAGGTATGTTTCAAATTGTCGTCACCACAAGCTTGGCCGAGGAAGGCCTGGGCCTGCCTATGCCCAGCTTGGTGATTCAAATGGATCCGTCAAGCTCGGTCTCAGCCCTCGTGCAAATACGCGGTCAGGCACCTCTGAACGAGGCACAGTTTGTTGCTATCTGCAGGAACGATGAGCAGGCCAAGAAAATTGAAGATTTACTAAAACGGGAAGAAAACATGAAACGTTCTGCTAGACTCATAAACGGGTTGTAA

Transcript

g28119.t1

Protein

Uniprot

Uniprot term	Description
A4RKC3	Dicer-like protein 1 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1 PE=3 SV=2
Q1DKI1	Dicer-like protein 1 OS=Coccidioides immitis (strain RS) OX=246410 GN=DCL1 PE=3 SV=3
Q7S8J7	Dicer-like protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF04851	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR006935	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10742	DNA2; DNA replication ATP-dependent helicase/nuclease Dna2	EC:5.6.2.3 EC:3.1.-.-	DNA replication proteins	ko03032	deepkoala