Gene detail

Detailed information of g28126.t1 in Acropora digitifera

Genomic Location: chr13Alt:13874470...13887931
NR annotation: CAH3024653.1, unnamed protein product [Porites evermanni]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g28126.t1

ATGGTATTATTTGCCCTCTTTTCAAGAAATATGGAGTGGACCGACGCACATGATATCCAACTTGCAAGAGAGGTACTTGTCAGTGAACCCTTCCGCTTTAAGCCCAGAACAGTGGAGCGTGGAAAAGTGTGGCAAGAAATTGCAAATAGGCTAAATGAAAATAGGCTCATTCACTTTAGAGCAACAAAGTGCTCAACGAGGGAGAATTTTAGTCTTCTTTTGGAAAAGTTCAAAGCAAAGCGTAAAAACGGAGCGAAACAAAGTGGTGTTGACGTTCAGGATTCAGAACTAGATGTTGCTATGGAAAAAATCTGGGAAAAATGGCAAGAAGCTGAGTCACAAGACGCAACGTGTGATATGAACAAGAAGCAAATTGAGGCGCACAAGGCAAGGGTGGAGGAAGTACGAAGAAAGGCGTGTGAGAAACTGGGAGAAACCTCAAAGAGAAAAATGGAAGAAGAAGCTGCTGAAGTCAAACCCACAAAAGGGACACAGCATGCCGCTGCAAAAGATGTAGTAGACCAGAGTCAGCCAGCATTCCGGCATCATGTTGCTTACCCTCTAGAAAAAAGCAACAAACAAAACCCCATTAAAGAGGTGTGTTTAAAAAAAATTGATGGAGCCATTTCGTTGAGGATAGGAAATATTGTCATCAACGTTGTCAAACTTGATCATGAGATCGCTACGGGCAGCCATCTTGATTTTTCACGTGTAAACACAGCACAGTTTGGTTATTTGAATCAATCTGGAAAATTTCATATAAAAATAGATGCCTCCTCGGGTTTTGGCCGTCTGGGCCAAAACCCTGCGGGGGCAATAAATTCATCTTACTTTCCTTCTAAAGCCAGGCTCAACTTTCGGTGGATTTTCAAAGAATTTGACCTTAAAAGCAACATGAAGGGATTTTTCGAGAATTTTCTTGCTGTATCGGTAAAGAAACTGAGGAAAGTGTTGATGATTCTTCCCTCGATCACTGGCCGTGGACGAGCGTTTTTTTGCCGAATCATGTTGTTATATGCCTTGTTTAGCGATCATCTGAGGGAAGCGTGTTCGACTTCGCAGTGCGCTGTGTTGTTAGTCTCGCGCTGGACAAGAGACACTCACACCTTTGCTATCTGCAGCAATGAAAGAAAACTCCAACATTCTACGCAGCTCATGACCATAACTTATGGTCCAAAAAAGTATCACCCATTGAGTTGTGTAGCTCCACGACGAAAACCGACCATGGCTTGTGGTCGAATAACCAACTTTCCGAGTTGTGTAGCTTGGCGGCCATTGTGCCACCTGATCATGAATTATGATCGAAAGAGTGTTAAGTTGAAAGCATTATTCTGTAATTTCACACTTCCAATATATTGTTGTTCCAAGTTAAAATATTGCTTTCTTTCACACTTTTCAATGTCAAACAAGGGCCGCTTTTGCAGAGCTGAAGCTTTCACTCGTAATACGAATGCCGCAAATCGGCTTACAGCCTCCTGGTATGCTATCAAAAAACAAGAAAATGAAAAAAATGTCCGTCATCCGGAAGTCTGCAGAGGAGTTTCACTTTGCGGCCGTCGAGTTGTAGAATTAAATGTCCTCGCTGAGGCTTTGGATGGGGGCTGTGAAGCCTGTGGGGCGGCACTACGGCTCTCGGACTGTATAAGAGAAACAGTATCTGGGCTAGGATCACTTCTTTACATATGCTGTTCAAACTCCGAGTGTGGAGAGACAAATATCTGTCGAACAAATAGGACCCACCGTAGAACCGGAACCACACGAGGAAGACCAATTTTTGATGTTAACACGAAGCTCGCTGCAGGCATGCTACACGCAGGCATAGGTCCTACCCACGTTAACGAGTTGTTGTCATCCATCAATGTACCATCAGTTGGGGAATCCACGCTGAAGGCTCGTGAGAGGGAATTAGGGCCCCAAATTGAAAAATTGGCAAAGGAATCATGCCTGGAAAGTTTAGAAACCGAAAGAAACCTGTCGAAAGAGGAGAGTGGAAAGGAAAATGTCGAGATTGGAGCGTCATATGACATGGGATTGCAAAAAAGGGGAAAAGCCCACAAGAGCCTGACAGATATGATGATACGGTATTTCCAGAGATGCTTTGGTTATGCACTAAATCAAAATAAGGATAATGAAGAAGGTGTTTTTATGAAGACACAACTATCTCCAGGTTCCAATTCTTTAAAGTTCACAAAGAAAATGGACAAGAGAATTCTAAGTTTGAAAGAGAAGCAGAAAACAAGAGAGTACAAGAAGAGAAGAATTGAGAAGAAAGAGAATCGGTTGAAAAAGACAAAACAGCTTGAGAACAGAGAGGGACGACAGTATAGTTCTGGAATGGGCTTTGATGGAGACCATGCTGCTCAGGGAATTCCAGCACCACCTGCAGCCTCAAAGATTGAGACAGTAGCATTGTCTAAAGACTACCATCACATCATATTTGATTTGGAAACATCTGGAAGGGGTAATGATGCTGAAATCCTACAAATTGCTGCCACAGATGGTAAAGATGAGTTCTCTATTTATGTCAACTTCCAAAGAGGAATGCTGTTTTACGATGGGAAGCCAATCACTGATGCTGTTGCAATTGATGTAGCCCTGAAGAACTTCATTGAGTGGCTCAAATCAAGAATGCCTTGCATTTTAGTGGCACACAATTGTAAATCCTTTGATGCCAGATTCTTGGTGCAAGCAGCAGAGAAAAATGGAGTCATCGATGACTTAGCTCAAACTGTTTCTGGCTTTACAGACTCTCTTCCAGCATTCAGGGAATTGCTTCCTGAAAGGAAATCCCATAGCCAGGTAAACCTTGTACAAGATCTTCTCTGTAAATCCTATGAAGCTCACAATGCTCTTGCAAATGTGCAAACACTCTACCAGCTGGTGAACAAGTTTCTAAATGTCAAACTACTACAGAAGCACAGCTTCAAAGTTTCATGGATGGTATCCTATCAAAAGCTCCTAAAAGAAAAGAAATTTCTGGTTAATACCCTACAGCCATTAGTCAGAGAGAAGTACATGTCAGCCTCAATGGCCATTAAGTGTGCAAACTCAGGTTTGGGTCTCCGTCACCTACAGCTGGTGTACCAAAGAGGCAAGAAAGAAGGGGTGAAGCAAGTTCTGATGGAGAGGTCTGACAACAAACCCAGAGTTTCCTCAAACAAGCGGGTGCTGGCGCAAATATGTCAATACTTCATGGATAATACAAATCAAGATTGCAATTTGTGA

Transcript

chr13Alt.g28126.t1

TCGACAAAAGAAATCCCGTTTGGAAACTTGTTTACGTCTTTCGGACACCTGGTCAATGGTATTATTTGCCCTCTTTTCAAGAAATATGGAGTGGACCGACGCACATGATATCCAACTTGCAAGAGAGGTACTTGTCAGTGAACCCTTCCGCTTTAAGCCCAGAACAGTGGAGCGTGGAAAAGTGTGGCAAGAAATTGCAAATAGGCTAAATGAAAATAGGCTCATTCACTTTAGAGCAACAAAGTGCTCAACGAGGGAGAATTTTAGTCTTCTTTTGGAAAAGTTCAAAGCAAAGCGTAAAAACGGAGCGAAACAAAGTGGTGTTGACGTTCAGGATTCAGAACTAGATGTTGCTATGGAAAAAATCTGGGAAAAATGGCAAGAAGCTGAGTCACAAGACGCAACGTGTGATATGAACAAGAAGCAAATTGAGGCGCACAAGGCAAGGGTGGAGGAAGTACGAAGAAAGGCGTGTGAGAAACTGGGAGAAACCTCAAAGAGAAAAATGGAAGAAGAAGCTGCTGAAGTCAAACCCACAAAAGGGACACAGCATGCCGCTGCAAAAGATGTAGTAGACCAGAGTCAGCCAGCATTCCGGCATCATGTTGCTTACCCTCTAGAAAAAAGCAACAAACAAAACCCCATTAAAGAGGTGTGTTTAAAAAAAATTGATGGAGCCATTTCGTTGAGGATAGGAAATATTGTCATCAACGTTGTCAAACTTGATCATGAGATCGCTACGGGCAGCCATCTTGATTTTTCACGTGTAAACACAGCACAGTTTGGTTATTTGAATCAATCTGGAAAATTTCATATAAAAATAGATGCCTCCTCGGGTTTTGGCCGTCTGGGCCAAAACCCTGCGGGGGCAATAAATTCATCTTACTTTCCTTCTAAAGCCAGGCTCAACTTTCGGTGGATTTTCAAAGAATTTGACCTTAAAAGCAACATGAAGGGATTTTTCGAGAATTTTCTTGCTGTATCGGTAAAGAAACTGAGGAAAGTGTTGATGATTCTTCCCTCGATCACTGGCCGTGGACGAGCGTTTTTTTGCCGAATCATGTTGTTATATGCCTTGTTTAGCGATCATCTGAGGGAAGCGTGTTCGACTTCGCAGTGCGCTGTGTTGTTAGTCTCGCGCTGGACAAGAGACACTCACACCTTTGCTATCTGCAGCAATGAAAGAAAACTCCAACATTCTACGCAGCTCATGACCATAACTTATGGTCCAAAAAAGTATCACCCATTGAGTTGTGTAGCTCCACGACGAAAACCGACCATGGCTTGTGGTCGAATAACCAACTTTCCGAGTTGTGTAGCTTGGCGGCCATTGTGCCACCTGATCATGAATTATGATCGAAAGAGTGTTAAGTTGAAAGCATTATTCTGTAATTTCACACTTCCAATATATTGTTGTTCCAAGTTAAAATATTGCTTTCTTTCACACTTTTCAATGTCAAACAAGGGCCGCTTTTGCAGAGCTGAAGCTTTCACTCGTAATACGAATGCCGCAAATCGGCTTACAGCCTCCTGGTATGCTATCAAAAAACAAGAAAATGAAAAAAATGTCCGTCATCCGGAAGTCTGCAGAGGAGTTTCACTTTGCGGCCGTCGAGTTGTAGAATTAAATGTCCTCGCTGAGGCTTTGGATGGGGGCTGTGAAGCCTGTGGGGCGGCACTACGGCTCTCGGACTGTATAAGAGAAACAGTATCTGGGCTAGGATCACTTCTTTACATATGCTGTTCAAACTCCGAGTGTGGAGAGACAAATATCTGTCGAACAAATAGGACCCACCGTAGAACCGGAACCACACGAGGAAGACCAATTTTTGATGTTAACACGAAGCTCGCTGCAGGCATGCTACACGCAGGCATAGGTCCTACCCACGTTAACGAGTTGTTGTCATCCATCAATGTACCATCAGTTGGGGAATCCACGCTGAAGGCTCGTGAGAGGGAATTAGGGCCCCAAATTGAAAAATTGGCAAAGGAATCATGCCTGGAAAGTTTAGAAACCGAAAGAAACCTGTCGAAAGAGGAGAGTGGAAAGGAAAATGTCGAGATTGGAGCGTCATATGACATGGGATTGCAAAAAAGGGGAAAAGCCCACAAGAGCCTGACAGATATGATGATACGGTATTTCCAGAGATGCTTTGGTTATGCACTAAATCAAAATAAGGATAATGAAGAAGGTGTTTTTATGAAGACACAACTATCTCCAGGTTCCAATTCTTTAAAGTTCACAAAGAAAATGGACAAGAGAATTCTAAGTTTGAAAGAGAAGCAGAAAACAAGAGAGTACAAGAAGAGAAGAATTGAGAAGAAAGAGAATCGGTTGAAAAAGACAAAACAGCTTGAGAACAGAGAGGGACGACAGTATAGTTCTGGAATGGGCTTTGATGGAGACCATGCTGCTCAGGGAATTCCAGCACCACCTGCAGCCTCAAAGATTGAGACAGTAGCATTGTCTAAAGACTACCATCACATCATATTTGATTTGGAAACATCTGGAAGGGGTAATGATGCTGAAATCCTACAAATTGCTGCCACAGATGGTAAAGATGAGTTCTCTATTTATGTCAACTTCCAAAGAGGAATGCTGTTTTACGATGGGAAGCCAATCACTGATGCTGTTGCAATTGATGTAGCCCTGAAGAACTTCATTGAGTGGCTCAAATCAAGAATGCCTTGCATTTTAGTGGCACACAATTGTAAATCCTTTGATGCCAGATTCTTGGTGCAAGCAGCAGAGAAAAATGGAGTCATCGATGACTTAGCTCAAACTGTTTCTGGCTTTACAGACTCTCTTCCAGCATTCAGGGAATTGCTTCCTGAAAGGAAATCCCATAGCCAGGTAAACCTTGTACAAGATCTTCTCTGTAAATCCTATGAAGCTCACAATGCTCTTGCAAATGTGCAAACACTCTACCAGCTGGTGAACAAGTTTCTAAATGTCAAACTACTACAGAAGCACAGCTTCAAAGTTTCATGGATGGTATCCTATCAAAAGCTCCTAAAAGAAAAGAAATTTCTGGTTAATACCCTACAGCCATTAGTCAGAGAGAAGTACATGTCAGCCTCAATGGCCATTAAGTGTGCAAACTCAGGTTTGGGTCTCCGTCACCTACAGCTGGTGTACCAAAGAGGCAAGAAAGAAGGGGTGAAGCAAGTTCTGATGGAGAGGTCTGACAACAAACCCAGAGTTTCCTCAAACAAGCGGGTGCTGGCGCAAATATGTCAATACTTCATGGATAATACAAATCAAGATTGCAATTTGTGAAATTTACTGCATTTATTGCACAAAAGCGGAAAAATCGAACCCTAGCACACTGGAATTAACAGAAGGCCAGCGCTGCAAAATAAAAATTTGGTTTTATC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan
PF20700 all species →	Mutator	Mutator-like transposase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR040393 all species →	Family	Three-prime repair exonuclease 1/2	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR049012 all species →	Domain	Mutator-like transposase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13058 all species →	THREE PRIME REPAIR EXONUCLEASE 1, 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000738 all species →	Biological Process	obsolete DNA catabolic process, exonucleolytic	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008296 all species →	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g28126.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.