Gene detail

Detailed information of g28199.t1 in Acropora digitifera

Genomic Location: chr13Alt:17044293...17118037
NR annotation: XP_015776031.1, PREDICTED: ubiquitin carboxyl-terminal hydrolase 7-like isoform X1 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g28199.t1

ATGATTACGACGGAAAATGAAAGTGATCAAGAGGAAATGGACACAAAAGAAGAGACCGTTGACGATTCTGCTGTGCCGAATGGAGTTTCTTCTCCAAGTGAACCTCACGATGTTATAATGGAGGAAGACACTGCGAGACCGGAAGGAGTTATTCGATTCACCGTGCACAGTTTCAGTAAACTTGAAAAAACAACCTTGAGTGACCCTATATATGTCAGAAATTTGCCATGGAGGATTATGTGCATGCCAAGATTTTCCAATCAAGACAAAGCCAAGAGTCTGGGTTTCTTTTTGCAGTGTAACCCAGAGACAGAATCACTGTCCTGGTCTTGTCAGGCCTCTGCTAGGCTGACCCTTGCACATCAACAAGAAGGGGGTGAAGACTTTACCAGAAAAATTTCTCATTTGTTTTTTGCAAAGGAAAATGACTGGGGATTCAGTCACTTTGTGGCGTGGAATGATGCTCTTGATCCTAACAAAGGTTTTATCAAAGATGATACCATTATTTTGGAAGTGCATGTGGCAGCTGAGGCTCCACATGGTGTTGCGTGGGATTCCAAGAAACACACCGGATTTGTGGGACTCAAGAATCAAGGAGCAACATGTTACATGAACTCGTTGTTACAAACACTATACTTTACAAATAAACTAAGAAAGGCAGTTTATCAGATGCCTACAGAAAATGATGACCCAAACAGAAGTGTAGCATTTGCCTTGCAAAGAACTTTCTATGAACTTCAGCACAGTGATAAAGCAGTTGGTACTAAAAAACTCACACGATCCTTTGGTTGGGAGACACTTGACAGCTTTATGCAGCATGATGTTCAGGAGCTCTGTAGAGTGTTGATTGACAACATGGAAAGTAAAATGAAAGGAACATGTGTTGAGGGTACAATTCCCAGATTACTGGAGGGGAAAATGCTTTCTTACATAAAATGTACAAATGTTGACTATGTATCTCAGAGGGAAGAGCCCTTTTATGATATTCAGCTTAATGTCAAGGGCAAGAAAGACATTTATGAGTCTTTTCAAGAATATATAGCTGTAGAAACTTTGGATGGTGACAACAAATACGATGCTGGAGAATACGGTCTGCAGGAAGCAAAGAAAGGTGTCATTTTTGCCAAGTTTCCTCCAGTCCTCCATCTTCAGTTAATGAGATTTCAATATGATCCCATAACAGACACCAATGTTAAAATAAATGACAGATGTGAATTTATGGAGAAGCTCAATTTGAATCGGTTTCTTCAGGATCCTGAAGACCACCTTGGTCAATACACATTGCATGCTGTTCTTGTACATAGTGGAGATAACCATGGAGGTCATTATGTTGTGTACATTAACCCTAGTGGTGATGGACGGTGGGCAAAGTTTGATGATGATGTTGTTTCTTTGGCTACCAAGAAAGAAGCAATTGATAATAACTTTGGTGGATATGAGGACGACATCACAGTTAAGCATTGCACAAATGCTTATATGTTGGTTTACATTAGAGACAGTGAAATGAAGGATATTCTTGAGGATGTGGATGAGAATTCAATTCCTGACACACTAGTGGAAAGGTTACAAGAGGAAAAGAGGCTTGAAGCACAGAGACGAAAAGAGAGACAGGAGGCACATTTATACATGGCAGTGGATGTGGTCACTGAAGATCAGTTTGCAGGACATCAAGGGTCTGACCTTTTTGACACTGAGAAAACCAAGCCAAAGAGTTTTAAAGTTCTCAAATCCAAGAAGCTTCTTGAAGTATTGGATATCCTGGCAGAAGGTTTGGGCTATCCAAGTAACCAAATCAGACCATGGCCACTTCAGCCAAGGAGTAATGGAACAACAAGACCCAGCTTATTGGACACAGAGGGAAACAAGGAGAAAACGTTGGGGCAGATTGTGGAAGGGAATCAGTGGTTTCTGTTTCTAGAGACAGTTGATCCTGAAGAAGGAAAAGTATCCTTACCAATCTTTGACAAGACAAATGATGTTCTGTTATTTTTCAAACATTATGATCCAATACAGAAGACACTTGCTTGTGTTTGCCACCTTTATACTCCACTTTCAGCAAAGTTTGTTGATGTAATCCCTCTCCTGTGTGAACGAGCAGGTTTGCCTCAGAAAACGCCCTTGGCCATGTTTGAGGAAGTGAAATCCACTTACGTGGAACAAATTAAAGACTTGAATGGCACCTTTGAAAGGGGGGTCGAGGAAATCATGGATGGAGACATCATTTGCTTTCAAAGGTGCGAGCATGATGTGTTAAGCACTAGTGAACTGCCCACTGTGGCGGATTATTTTAGAGATCTTCACAACAGAGTTGAAGTTTTATTTTGTGATAAAAATTTCCCAACGGATCCTGGATTCTGTGTCAATCTTTCTCTTCGAATGAACTACATGCAGGTTGCCAAAGCGGTGTCAGCCCACTTGGAGATTGATCCCATGATGCTTCAGTTTTTCAAGGGACAGTCGTATCGCGATGCCCCAGGGAATCCTCTACGGTGTACTTACGAAGGAACACTCCGAGATTTGCTGTTGTACTATAAACCACGAGGACCTAAAAAACTTTACTACCAAGTGCTTAGTATCCCGATTGATCAACTTGAAAACAAGAGACAATTCAAATGTGTTTGGGTAGCCAACCGGTTTAAGGATGAGAGGGAACTTGTCCTCTTTCCAAACAAAGATGGAACGGTGTCGGATCTACTCAATGAGGCCCGAGAGCAAGTAGATTTGCAACCTGACGGAACGGGAAAACTTCGACTTCTGGAGATTATAAGTTCGAAAGTGTTTAACGTTATAGGCAACGATGTTCCACTAGAGCACCTGACCAACCAGGCGCAAAGAACGTTTAGAATAGAAGAGATTCCTGAGGATGAAATAGAGCTTGGCAAAGATGAGCTTTTAGTTCCTGTTGCACATTTCAGCAAGGAAATTTATCAAACATTTGGAAGCCCATTTTTGATCCGAATAACCGATGGAGAGTCGATTACGAACTTTAAAGAAAGAGTAAAAAAGAAGATAGACATTCAAGAAAAAGAATTTGAAAAGGTCAAATTTGCGGTGATTCACATGGGGCGGGCTATGTATCTGTCAGAGGAAGCTGACAAACCAATTTCGCTGAAAGATTTTCTCCCCCAAGCACCAGGCACACAGAGTATCAGCAAACCATGGCTTGGACTCGATCACCTGAACAAGGCTCCAAAGCGCTCGCGGTATAGCTTCCTGGAGCGACCAATCAAAATCCACAACTAA

Transcript

chr13Alt.g28199.t1

AGTGTCACAATGGAGGACGATATCAGTGCGAAGTTGAAGACAAGCGAAAGGTGGTAGTTTATTCGCTTTGAGCGATCTGTCGCTCTCATTTTTGATTTTTAAGCCGTCTATGACCAAACACTTGTCGCCGTGTTTCCCGGTAAGGGATTGTGGGGCGCAATTGGCCGCATAGCCAGTAAACATATCAAGGTTGTGACTGGGACTCGCTCAGATAAAACTCGTCCCAAGATATTAAACTCCAAAACCGAAGAAGAAAGCATGATTACGACGGAAAATGAAAGTGATCAAGAGGAAATGGACACAAAAGAAGAGACCGTTGACGATTCTGCTGTGCCGAATGGAGTTTCTTCTCCAAGTGAACCTCACGATGTTATAATGGAGGAAGACACTGCGAGACCGGAAGGAGTTATTCGATTCACCGTGCACAGTTTCAGTAAACTTGAAAAAACAACCTTGAGTGACCCTATATATGTCAGAAATTTGCCATGGAGGATTATGTGCATGCCAAGATTTTCCAATCAAGACAAAGCCAAGAGTCTGGGTTTCTTTTTGCAGTGTAACCCAGAGACAGAATCACTGTCCTGGTCTTGTCAGGCCTCTGCTAGGCTGACCCTTGCACATCAACAAGAAGGGGGTGAAGACTTTACCAGAAAAATTTCTCATTTGTTTTTTGCAAAGGAAAATGACTGGGGATTCAGTCACTTTGTGGCGTGGAATGATGCTCTTGATCCTAACAAAGGTTTTATCAAAGATGATACCATTATTTTGGAAGTGCATGTGGCAGCTGAGGCTCCACATGGTGTTGCGTGGGATTCCAAGAAACACACCGGATTTGTGGGACTCAAGAATCAAGGAGCAACATGTTACATGAACTCGTTGTTACAAACACTATACTTTACAAATAAACTAAGAAAGGCAGTTTATCAGATGCCTACAGAAAATGATGACCCAAACAGAAGTGTAGCATTTGCCTTGCAAAGAACTTTCTATGAACTTCAGCACAGTGATAAAGCAGTTGGTACTAAAAAACTCACACGATCCTTTGGTTGGGAGACACTTGACAGCTTTATGCAGCATGATGTTCAGGAGCTCTGTAGAGTGTTGATTGACAACATGGAAAGTAAAATGAAAGGAACATGTGTTGAGGGTACAATTCCCAGATTACTGGAGGGGAAAATGCTTTCTTACATAAAATGTACAAATGTTGACTATGTATCTCAGAGGGAAGAGCCCTTTTATGATATTCAGCTTAATGTCAAGGGCAAGAAAGACATTTATGAGTCTTTTCAAGAATATATAGCTGTAGAAACTTTGGATGGTGACAACAAATACGATGCTGGAGAATACGGTCTGCAGGAAGCAAAGAAAGGTGTCATTTTTGCCAAGTTTCCTCCAGTCCTCCATCTTCAGTTAATGAGATTTCAATATGATCCCATAACAGACACCAATGTTAAAATAAATGACAGATGTGAATTTATGGAGAAGCTCAATTTGAATCGGTTTCTTCAGGATCCTGAAGACCACCTTGGTCAATACACATTGCATGCTGTTCTTGTACATAGTGGAGATAACCATGGAGGTCATTATGTTGTGTACATTAACCCTAGTGGTGATGGACGGTGGGCAAAGTTTGATGATGATGTTGTTTCTTTGGCTACCAAGAAAGAAGCAATTGATAATAACTTTGGTGGATATGAGGACGACATCACAGTTAAGCATTGCACAAATGCTTATATGTTGGTTTACATTAGAGACAGTGAAATGAAGGATATTCTTGAGGATGTGGATGAGAATTCAATTCCTGACACACTAGTGGAAAGGTTACAAGAGGAAAAGAGGCTTGAAGCACAGAGACGAAAAGAGAGACAGGAGGCACATTTATACATGGCAGTGGATGTGGTCACTGAAGATCAGTTTGCAGGACATCAAGGGTCTGACCTTTTTGACACTGAGAAAACCAAGCCAAAGAGTTTTAAAGTTCTCAAATCCAAGAAGCTTCTTGAAGTATTGGATATCCTGGCAGAAGGTTTGGGCTATCCAAGTAACCAAATCAGACCATGGCCACTTCAGCCAAGGAGTAATGGAACAACAAGACCCAGCTTATTGGACACAGAGGGAAACAAGGAGAAAACGTTGGGGCAGATTGTGGAAGGGAATCAGTGGTTTCTGTTTCTAGAGACAGTTGATCCTGAAGAAGGAAAAGTATCCTTACCAATCTTTGACAAGACAAATGATGTTCTGTTATTTTTCAAACATTATGATCCAATACAGAAGACACTTGCTTGTGTTTGCCACCTTTATACTCCACTTTCAGCAAAGTTTGTTGATGTAATCCCTCTCCTGTGTGAACGAGCAGGTTTGCCTCAGAAAACGCCCTTGGCCATGTTTGAGGAAGTGAAATCCACTTACGTGGAACAAATTAAAGACTTGAATGGCACCTTTGAAAGGGGGGTCGAGGAAATCATGGATGGAGACATCATTTGCTTTCAAAGGTGCGAGCATGATGTGTTAAGCACTAGTGAACTGCCCACTGTGGCGGATTATTTTAGAGATCTTCACAACAGAGTTGAAGTTTTATTTTGTGATAAAAATTTCCCAACGGATCCTGGATTCTGTGTCAATCTTTCTCTTCGAATGAACTACATGCAGGTTGCCAAAGCGGTGTCAGCCCACTTGGAGATTGATCCCATGATGCTTCAGTTTTTCAAGGGACAGTCGTATCGCGATGCCCCAGGGAATCCTCTACGGTGTACTTACGAAGGAACACTCCGAGATTTGCTGTTGTACTATAAACCACGAGGACCTAAAAAACTTTACTACCAAGTGCTTAGTATCCCGATTGATCAACTTGAAAACAAGAGACAATTCAAATGTGTTTGGGTAGCCAACCGGTTTAAGGATGAGAGGGAACTTGTCCTCTTTCCAAACAAAGATGGAACGGTGTCGGATCTACTCAATGAGGCCCGAGAGCAAGTAGATTTGCAACCTGACGGAACGGGAAAACTTCGACTTCTGGAGATTATAAGTTCGAAAGTGTTTAACGTTATAGGCAACGATGTTCCACTAGAGCACCTGACCAACCAGGCGCAAAGAACGTTTAGAATAGAAGAGATTCCTGAGGATGAAATAGAGCTTGGCAAAGATGAGCTTTTAGTTCCTGTTGCACATTTCAGCAAGGAAATTTATCAAACATTTGGAAGCCCATTTTTGATCCGAATAACCGATGGAGAGTCGATTACGAACTTTAAAGAAAGAGTAAAAAAGAAGATAGACATTCAAGAAAAAGAATTTGAAAAGGTCAAATTTGCGGTGATTCACATGGGGCGGGCTATGTATCTGTCAGAGGAAGCTGACAAACCAATTTCGCTGAAAGATTTTCTCCCCCAAGCACCAGGCACACAGAGTATCAGCAAACCATGGCTTGGACTCGATCACCTGAACAAGGCTCCAAAGCGCTCGCGGTATAGCTTCCTGGAGCGACCAATCAAAATCCACAACTAAATCAGCGACTTAAGTTTATCTTTTAATTGGAAAAAATCATGAATTTTTAGTGGCACTATTGTTTGGTTGAAAATGGCGAAACAAGTCAGTTCTCAGCAAAGCGGGTCACCAAGCGAGCTCTCTTCATCAATTTGTACATTTGTAAAGACTTAAGAGTGCAAGTTTTTAGTTAATTCCAGGGAGACTTCGGGAATGCTTTAAAAGCACTTGTACTTATGTGTAAAGGTACCACAAGGTTCTTTGCCTTTCAAGCAAATTAAATTCATTTCTTTTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q93009	Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens OX=9606 GN=USP7 PE=1 SV=2
Q4VSI4	Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus OX=10116 GN=Usp7 PE=1 SV=1
Q6A4J8	Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus OX=10090 GN=Usp7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12436 all species →	USP7_ICP0_bdg	ICP0-binding domain of Ubiquitin-specific protease 7	Family	Interproscan
PF14533 all species →	USP7_C2	Ubiquitin-specific protease C-terminal	Family	Interproscan
PF00917 all species →	MATH	MATH domain	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR050164 all species →	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR024729 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain	Interproscan
IPR029346 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase, C-terminal	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0031647 all species →	Biological Process	regulation of protein stability	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11838	USP7, UBP15; ubiquitin carboxyl-terminal hydrolase 7	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.