Gene detail

Detailed information of g2823.t2 in Tripedalia maipoensis

Genomic Location: scaffold_12:18840905...18857193
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2823.t2

ATGAAGCTCACAAAAGCTGAACCGGGAGACCTTGCTATGAAAGACGCAGTGAAAACCAAGAAGGAAGATCCCTCGGATCCGAATGCTGCAATGATCGTGCATGCCCAACCGCGTAGTAGTGGCGATGATGTGTCGAAAGGAACCGGGACGATTTATCCGGTTTCAGCAGCATGTACTACGCATTCCCACCCGTCGCAAGTACGGATGCACGTCTGTTTGTTGTGCGACACTAACTTCTCCGATATAGCCATGTTCAATCTGCATATGAAAGCGCATTCGGTCGAATCAGCAGATAAGGAGCGGCCAAAACGTAAGCGACCAATCGTGTACTACGCTCTTCCTGGCGAAAACGTTGAACACTACCCACTACCCCGGAAATTAGCAAAGCACACAAACCACGAAATGGATAGATCAGTCCGTTCACCACGACCTAGTGAACTAGAGCACTCTGAGCGTCAAAAAACGAGCATATCCTTACCTCTTAATCCTACAGGAAGAGACCATTTTTGTAGTGGAGGAACGGTTGTAATACGTGAACATGTGGCTGTGTCTAATGCACCGTCTAGTCCAGTTCGAGAGACGGAGTACAGAACGAGAGGTGCCGACGGCGAAATAAAAGTTCTGCGGCCGGAGCATGATGATCATGCAGACACCCATGATGCAAAAGAACCTGCCGCCCGGTATGTATCATCGACGAACCCCACTGATGAACGAACTGCTTTTTCGTATCACAACGAAGGCTCAAGTAAAGGAGACGCATTCGTAAATCGGGACTCTGTCTCCCCTTCAGCTAGAAAGTTTGCCGTCAGTCCGCCGCACTCGCTTGTTAATCCTGACTTAGGTAAGACATGTAGCGTAACAGGAGATGGAGCGATGCAAGTCGCTGAATGCGGACTGTGTGGTTTGTCCTTCACTGCCCACATTTTGCTGGATCGCCATGTCCAAGAGTCACATTTAAACGAGGCTGGTCGTTTCAACTGCAGCTTCTGTCCGAAGGACTTTGCCAGCATGACGTCAGTGAAACGGCACGTAAAAGCCTATCACGATGGAGACTATTTGCCGTTGCGTCTTAGCAGATGTTCGCCATCGACTGTTAGACTTGTTGGGGAGGAGGTCAGTAAACCGGCCGCAGTTTTTCAAGGCTTCAGCTGCAGTTTCTGTGGCCGATACTTTGACACACCTAGTCAGTTGCAACTCCACGTATCTGCCGAGCATCCTGCGCTAACAAAAATCGAAATTCCAAGGTCACATGGCACCAGCAAGCGACTACGCGAGCATCACGTGACTTATGCTTGTCCATCCTGTAAGGCTGAATTTACGTCATTCGATGTTTTCCTAGAACATTTGGAACAGCACGTTGAAGAGAAGGAAAAATCAGAGGACAAGAGGAGGCTTTCACGATACAAGGAATTATTTTGCACTGAATGTAAAATTGATTATGAAACCATGGAGTCCTTCTTGAAGCACCTTGAAGTCTGCCCAGGGCCCAGGCATATGTTAACAAGTCAGCCCAATGGGCACAAAGCGTTTTTTGTCGGGCGACCTCCGCCTCCAAGTAAAAGCCTCAAGGGGGACAGTGATAGTGACAGTGGTGATGTTTCCATGGTAGCAAAACATGGTGGGGGCAGCCTTGATCTGGGAGAAAAGGGTATGGGTGGGGGAACGGGTGGACGTCGAGATGAAAGTGTCAACTTTTACCCTGACTTGGTGGAGGTGCCAACCGATGGCGGTTCGCGAAACCTTCACCAGCTGTGCTATAGTTGCAAAAGCTGCAACCAACGCTTTAGCAAGTTGGACCTTTATCTTGATCATCTTCAGGCACATGAATCCAGGGAAGGCACCGTGGATCCGGGGGATACTGCACCTACCCTGTGCAGTAACAGGGCCGAGAGATCCGAAGAGAAGCCGAAGATCAGTGCTTTTCCTCCTACTGGGGGCAGATCATCGATCTTGGACAGAGATGAAGCTGGCGCGATTGATGACGAAGAACATAAGATGGAATCAAAAGCTACGTCCCCCAGAGAGAAAAGCAAGTTCCCCGGTAAGCCATCGTCAGACGACCTAGTATACCACTGCCATTCATGTCGCATGTGCTTTGCCAAGTTAGATTTGTACTTGGAGCACTTGGAGATCCACTGCGAGTGGACAGGTGGGGCACGAACAGGAGAAAGGTGGGGCCCCAGCCCACCGCACACCGCCGTAACCTCTTGCACCCTCGATAAAAAAGAAAAAGCAACTTCAAGAAAACCCTCGGATGCACACCCACCACAAGGTGTTCTCCACTCCCCGGCGACCCCTTCTGAAGAAGTCCATGTTGGGCGGCATTCGAACATGACTTGTCTAAGCTCCTCTTTTACTCAAGGGAAGCGGGAGGAAGCTTCCATCTTTCAGGGACCTGTGTTCGACCGCGTTCTCGTGCCGTCTTGCCCGCAAGAGGCGCCTGGACGATTTTTGCGTGCAAGTCAAGCTTCGCCTCTAATGCACCATCAAACACTCTTGCAGAGCGGCGCACTGACAACCGGCGCACGTACAGTGAAACGGGCGGATTCTCAGTCACCCCGGCGCTACGTGTGCCAGGTTTGTTCCATGGAATTGCATCAGTTTGATGTTTATTTAGCCCACGTGGCTGGTCATAACGTCAATCAGAGACATAAGCAGTGTAGTCCGTCCGGTCGGGATCAGCCTCTTGATGATTCTAGTCCGCGTAACAAGGTTCATTCCTCCTTGCAAGGTACAAAGCTCGTATATTGTATGATTCCGGTCTTGCTTGGTCCGCGCGTCCTGCAGACTTTAGAGGGTGAAGGACCGCACTTCATGTGCCAGTTCTGCAACACGTTTTACAAAACCATTGAAGACCTACAGCTGCATGCTAAGAGCCATTATCCCCGTCTAGATCTTGCTCATTCTCCGGGAGAGCCGGTGCCCTGCGTGAAGCCGCCATCGCCCAAGAGTTCCAGCGCAAGGGCAAGTCCCCGCTTCATTAAAGGCATCGTCGAACGGATTGACTCCACAATCAGCAACAATGCACGCCTCCTTCTGCAAGCCAGTGAAATACCTATCAAAGGAGAGCAAAAACCATGTCACCCGAGGAGTGCCAGCGCAGGCCCTCGTCAGCGCAGTACACCCCCCAGGAAACACTCCATTGGAACTACTGAAGGTTTAGAGCTAAACTATTCATCGGCCATCGAGCCTCGTTTTGACTCTGCCAATTCTAGCCTAGCTTACGCCTGCAAGACCTGCAGCCTGGGCTTTCCTAGCCTGGACGACATCATGAAGCATATCGCCGAATCCGGGCATGACAGCCGCATTGAGCCTGCACGTAATGTGGAAAGCGGTCGTATCGCATGTCCTGTTTGCGGGGTCAAAGTGAGATCGCAAGAGAAATTTATGTCGCATTTGCGAGTGCAGCACCTGTCCAGAAAGTCACATGTGTGCCCCACGTGCAATTTAGCCTTTGGGCGCCGCGTTGACCTGGTGGTGCACATGGACCAGCGGCATCGCGTCGGAACACTCTTCAGTCCCCAAGGTGCCTGTGCTGAAGAATCAAATTGTGATAGCACGGGAAAGAAGGAGGCCATCGGCGAAGACGGAGTACGAGGTGCTCATTATCTGGAGGAAGAGGAAGGGGATGCTGGTCCAGAGTCGGTGTTCATTTGCCAACCTTGTCGATTGCAATTTTCAGAAGAGGGTGAATTTTTTCAGCACATCGAAACCCACGAACATGGCAAAAGTTTGGAGACGACTGTATCAGAATCGGTGTCAACGGAATCGTCCAGCAGCCATTCGGGAGGCGGTAAGGAGAAAGACGTCGCAGATGAAGAAGCACCTCACATTTCCAGCTACTGGTCAATGGCTTCCGCCCGGAAACGTCTAGCATCGGAGAAGCAGTGA

Transcript

g2823.t2

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF05605 all species →	zf-Di19	Drought induced 19 protein (Di19), zinc-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR008598 all species →	Domain	Drought induced 19 protein type, zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24379 all species →	KRAB AND ZINC FINGER DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22870	ZNF423; zinc finger protein 423	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.