Gene detail

Detailed information of g28343.t1 in Acropora digitifera

Genomic Location: chr13Alt:18673415...18691330
NR annotation: XP_029180001.1, 4-aminobutyrate aminotransferase, mitochondrial-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P80147	4-aminobutyrate aminotransferase, mitochondrial OS=Sus scrofa OX=9823 GN=ABAT PE=1 SV=2
P80404	4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=ABAT PE=1 SV=3
P61922	4-aminobutyrate aminotransferase, mitochondrial OS=Mus musculus OX=10090 GN=Abat PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202 all species →	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005814 all species →	Family	Aminotransferase class-III	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR004631 all species →	Family	4-aminobutyrate aminotransferase, eukaryotic	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43206 all species →	AMINOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0003867 all species →	Molecular Function	obsolete 4-aminobutyrate transaminase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0009450 all species →	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan
GO:0009448 all species →	Biological Process	gamma-aminobutyric acid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13524	ABAT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase	EC:2.6.1.19 EC:2.6.1.22	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g28343.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

83.0Max TPM

53.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	53.64	83.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	83.01
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	81.12
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	80.38
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	77.48
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	75.15
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	69.62
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	67.64
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	67.47
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	65.51
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	65.29
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	62.41
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	62.00
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	61.76
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	61.50
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	61.28
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	59.95
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	59.35
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	58.31
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	57.18
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	57.15
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	55.79
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	54.44
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	53.28
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	53.00
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	52.03
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	49.83
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	43.52
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	42.81
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	41.76
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	40.68
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	39.90
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	34.33
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	33.06
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	32.98
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	29.98
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	27.74
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	27.35
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	26.80
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	19.29

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.