Gene detail

Detailed information of g28401.t1.1 in Astreopora myriophthalma

Genomic Location: :...
NR annotation: XP_029214184.2, AP-5 complex subunit beta-1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

g28401.t1

ATGGCTTCACTGGCAAGCTACTGGACCACAAATGTCGAACAATTCCGTCGTTCCCCGGAGTCTTTCCTCGCAGCACGGAAGATAACCGCacacaattttgttttggaCATTCTTGAGGTTCTTTGTACTGAAAACTTCCCAGAGAATTTGAAACTTCAAATGTTATTCATGCTTCAAGAAAAGACTTCCAGTATGGCTGTGACAAGCATTCCAAGATTGGAACAAACTGTCAACTCCAGGAGGGACGTCTTAGTACATTCAACAGGACAATCACAAATTTATCTCAGCCAGattCTGGTGACAGGAACGGTCATACTAATTACTTCAGAAACAGTGGAAACAAATCAGGAAgtttttgtgcattttgttgGTGTTCTTACCGATGTTATAGAGATGGTTAATAATCCTTGCAACTTGCTTGTAAGAAAGAGTGCATGTGAATGTCTTTGGGAAATGGAGATGTCTTATCCGGGCCTCCTCCATGCTAAACTGGATCATCTCTATGCTAAATGTGCTGCTGAGAACAGTCCCATCTTCCAAAGCTACATGGTTTTGTTTGTAACAGTCCTGCATCATGCCATGGAACAGTTGTTACGAGAGTCTGCCAATAAGTTAGATGACAACTGTGTGAATAACTTACTCACAAGTCGCACAGAACCCTTGAAGcCACTCTACTTACCAAAAGAAGCAGCAAAGCAGTTTTTGCCAGTTACCATTCAGGCCAGAGCATTCAGTTCCAAATCACTGAGTTTACCTGGGAATGTGGATACCAGGGAAATAAAAAGAGCAATTTCATTCCTGATGGACAATATTAGTTTTCTCAACACTACTGGCGTTTTCCATGTTATGTGCCAACTCATGCAATGTGTCAAACTTGCAGGACTCTCCCCAAATACCTTTAAATCTCAGTTCATCACCTGGGTGTCAACCACAGATCTGTCTGTCTTCCATATGTTGTTACTTTTGAAGatgaaatttttggatgatttgttTCTGGAAGGTGATGAAATGCTGCTTCTACAAAGAATGCTGATAGTCTCAAGCCAACCCACCATTCCACAGGGACAGCGTCTGTTGTGTTTTGAATGGCTCATGTTCTTTCCAACTGAAGAGGACTTGCCTGTCCAACCAAGTGTACCCCACTGCTTGGATTATTCACAGTTTGGTTATTTTTATCCTTCCGTGTTTGATTCTTTGGACATTACAGTGGACAAACTGAAAATACTCTGTCTTTGCTTGGACCATGAAACCTTAAACTTGCCAGGATCCGTAGGTGTTCCCTTGATGCAGTGTCTTGCTCCACTCGTTAGCAGAGTCCAGCACGGCGTTGGAGGCAGGGTTGCTGTGGCCTTGTTCAGAAGTGTCTTCTGGTACTACAAACATCATTGGGATTCGGAGCTAGTACAAGACATTTACAAACTAGTGTTATCAATTGTCACCAATCATCCTCAATTCATACAGCACACTGTTGATTTGCTAAATGCAGTCTCCATCATTACCCCGGACAGgCTCATTTGGATCTTCTCTGGTTTCTTTTCTGAGCAGTGTTCGAAGATACTGGGCACAGAAACACCCAAGCAGGGACTTCCTCAAGCTATTGCAGatgacATTACAACCAGTACGTTTCCAGTGCCGCCTCCTGTCAAACACATCGGAACGCCGTTTATCGAACTTACGAGGGTCGCTCAAACTACGAGCGGAGGTTCCTTGGCTGATATCATGGCCTCATCACTTAGTGATCAGGAAGAAATTCCTAGTACACCAGGTTGTTGTCAGATCACAGTCAATTTCTGTCCTCTTGATCCAGTGCCCGGGAGTTTTCAAGTCAGGGCGGTTTTTAGTGACGAAAATGGGCTAACATGCGCAATGAACCTAGAAGATTTACATGTGCATTTTTCGGATTTGTTTATTCCTCTTCGCGTTCCTACTAATTTTGAGACGACTCCACTGTCAGTTGTTAAGGGAGAGCTCTTTTCTGTGTTATGGGATTACATTACGAAAGTCCAAGGAACCAGTGGAGACCCCACAGGTACTGGGGCCGAGTCCgttgtctgtctctctgtcgaGTGGAGCACCATGGGAAGGATCGTAGAAGAGTGCTTGCTTCCTTTCCTTACGAGTGCTTCAGGTGATGAAATACGACTGGGCATATTCCTTCCACCTCTTCAGCATCTTCTGTTAAAATTCCGCCCTCTCAATCAAACAACTGTGGTCTCCATAGCAACCGATGACTGGCGCTTGCTTGAGCTGGTGGAGTTGTACCTACTGCAATTCGAGCAAATCAGCGTCTCACGCAAAAGGAACATCTTCAAATTTTCTCGTCTAACGTTTGCAGACTTGAACCAGTGTGGGGCCATGGAGATCGACTGGGCTGAATTAAAAGCTTTTTACTTCCGaaatgaaaatgtcattttgAGAGTACCATTCACCTTGTGCTTGCAACTTGCGGCATACTTAGACGAAAAGGTGAAATCTGACGAAGATACGAAAGCCTGGTATGAGATAGCTGCTGTGTTAAGTGGTCTGTTTGGTGCTGTTGGATTATTGACACACCTCAAAAACCTGCGGAGATTTTTCATATGGTTAATGGAACAAGTTATTCTCATAATAGGCTTTCTTGCTATTCTCACTTATTCTCCAATGGATGCCAAGAAAGAGATTTCAACAGAGAGTGAAAGCAAGGAAAGTTCCTCGTATCTGGGTGGCATTTATGGCGGTTCACTTTTATACGCACAAGTTTTGTTAGCTGTCAGTGTGGCCATAGCACCTTGCAAGTGGACAGCCATTGCCACTGCCAAGCAGACAGTTGgactttttgtgttttttcccaTTATTACTCAGCTGGCAACATTACTCTTTGTGCAGGTCACTTCAATTTTACGGGAGATCTGTCTAGCTTACCTTGTGTTCGCATCAGTCATTCAATTGTACAAGGCCTGTCTTGGGCTTTTGGATCTCCTCCAAGACTTTCCAGGCTTGGTTAAACATACCTGCAGGATTGTAATTACCTACGGATGGTTggactgttttatttttcattggaAGAGGATTGAATTAGACAGGGTCTTGATGGTCGCCTGGTTGACAAAATTTGTTGGCATGttcctattttttttcaaacatggTGTGCTTATTGCAATCTCCAGAAGTTTAGTGGAGTGTTTTGACAACCTTCAAGATTTAGCAGGAGCCAGTATCATTGTTGGAGCAGCTGCTAACATCACCTTGGATATCATAAATAAAGTTCTGAAAAGAAATATTGAGAGACCCATGGAAGAGCGTCACCAAGAGGCATGGAATGAAGgcgtttctttcttccttttgacTGTACAAGTTCGACTCACCAGCCTGCCAAAACCAGAGCGTCTGATGCTCCTTGGACTCGTCATGTTTGTTTCGATCTCACTGTTCCTGCAGTCGGCATATGAACTTACGGAACCTGCTCTCATGTCCCTGGGAGCAACATACTCTGGTGTTTTCAACAGTAAGCATCTGCGCACTTTGGCAGTTTGTGCTGTGATCCTAATACTTCCTGGTTACATGATCATTGTACTGTGTCAGTTATTCAGCTTTGATGCATGGCTGTTTGTTATCATATCAAGCAATCTTGTGACAATTGTTCAAGTCACCGGCTCTCTTATCATTTATGCACTGTTTGTTTCAAATGTTCATTCAGAGTCACAAGTCAAGGACTTAGACGACTATGTTTATTACATCAATGCAGGCTCTAAAATCTTTGAGTTTCTGGTTGCCCTGGTTGTTCTGGGGTACACTGCATGGGCCACCTTAATGGGAGAATGGAACTATATAGGTGCATTAGTCATCTCAACACATGCTTACTTCAATGTGTACAAGAGAGCCCAAGAGGGTTGGAACAATTTCTTGTTGAGGCGAAGTGCAGTGAAAAGACTCAACTCCTTACAGTGGGCCACAGAACAACAGTTAGAGCAACTAAATGATGTGTGCTGCATTTGTTATGAAGAGCTGGATAGTGCAAAAGTCACAAAATGTAATCATTATTTCCACAGCTTGTGTCTTCGGAAATGGCTGTATGTTCAGGACAAGTGCCCAATGTGCCATGCTGATATTCTACCGCTGGATTGA

Transcript

g28401.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q0IJ20	RING finger protein 145 OS=Xenopus tropicalis OX=8364 GN=rnf145 PE=2 SV=1
Q5SWK7	RING finger protein 145 OS=Mus musculus OX=10090 GN=Rnf145 PE=1 SV=1
Q96MT1	RING finger protein 145 OS=Homo sapiens OX=9606 GN=RNF145 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21589	AP5B1_barrel	AP-5 complex subunit beta-1, beta-barrel	Domain	Interproscan
PF13705	TRC8_N	TRC8 N-terminal domain	Domain	Interproscan
PF21588	AP5B1_middle	AP5B1, middle domain	Repeat	Interproscan
PF21590	AP5B1_C	AP5B1, C-terminal	Domain	Interproscan
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048980	Domain	AP-5 complex subunit beta-1, beta-barrel domain	Interproscan
IPR025754	Domain	TRC8-like, N-terminal domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR048979	Domain	AP5B1, middle domain	Interproscan
IPR048981	Domain	AP5B1, C-terminal domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR038741	Family	AP-5 complex subunit beta-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34033	AP-5 COMPLEX SUBUNIT BETA-1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0030119	Cellular Component	AP-type membrane coat adaptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23789	RNF145; E3 ubiquitin-protein ligase RNF145	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala