Gene detail

Detailed information of g28447.t1 in Montipora capitata

Genomic Location: xfSc0000159:13166...54761
NR annotation: CAH3016422.1, unnamed protein product, partial [Porites evermanni]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g28447.t1

atgttgacagaagtcattttacacacttgtacagtggatgtcagtggtcttcaactggggaatatacaaggccttctgttctttccaaaatgtggcagcaagcaaggtgcagagatattggaggcttttctggataatttgacagtgcagagtgatgctttagttgaaaatagccagttatcattgatatggggcactgttttgtgtctttcttgcatcagcccattagacattgctcgctgttgtgagaagctgcttgaattgattcattcagttactgagcagcttttatcaagtaataaagaaacaagaaactccgcagcatgtctgagtatgcttagtcaagccattcagtcgtattgttggctagtgtccagagaagagcagcttacaatcctcctagattacaatttcgctcagaagttagtcagctcatggcctgacaatgttttcgttcttcaagcatgttacaaactagtgacagtggcaagaaaacaaggaatacaaagctttctagccgccggaaacctccaggagatctacggctatgcccggctaaatctgtgctcggctagtcacgttacacgccttctgactcttaagatactggcctgttttgatcaagaagaaaaggtaaatgcgccgtattcgtatccttacggtagcaccagagctccttcttccacccaaggctcgctgtttcaattgtgcgtggaagctgaagaaattcctgcacatttcgaaacttacagagaccggctagcttgtcttcagaaacttcgcttcattagagcttattatgacaccatgccagagttttgccttgaagctactcttctctacctgttcggcatgctttacgtgaatttaaatcttctgtgggatcctgtcattgaaatcatctccagtttcactcaaggttgcaataaaaagcttttttggaaagtttatagcgagcgtctgattgcagcagcagagaaaacagagaaggaagtaaaccaagactcagccgtccatgagcaagcagccatcagatatagcgaattggcaggcaccaagcccgtgaagacccttgatgatatatttgcttggctcaacagcgactctctgggtccacgacaagaaaacagagccgaccacgccaactttcgttatctgttatggaaagcaatggcctcctttcctgaggttgcggagcagaattcacgcgatgtagtaccgttgtttcttagatttgtcagcaatgaatatttcgtggcgaatgaaagctcagcaccttctcaagacatcagagccaagcactcgtctgatctgcaagaggtaccccccacaaatgagatcaaccaatcagagctcgaagcaccacaagcagagaatccctgtactgaaccacaaaacatcgtgtacagaaagagccacagagcagctgcgaaatccttgtgcattcatctcagcttattcacggcatttaaaggaccaaaatcactgttcaaagaacctgagctgagacagttatatatgagattcttgacgcaaaaagagagcgaagttcaaaagcttgcggtgaagtgtctcacgacttacaagtttaattaccttcagccgtacaaggagaatgttgagcgcttattggaggacgagaactttcgagaagagttggcacatttctccgttgacgaggagagaggcatcgtggactcgaatcatcgagaggggcttatgccaatccttataaggcttttgtacggcaaaatgaagagatggactgggactggcacaggtggaaaggctggtgtcggtacgaggcgatccgtggtgctgaggttcctggcctcttgtcctcagcatgaaatgcaaatattcatggatttgattttagcgccattcaagcacctttacacagtggacaatccaggtctgattattaccacgaaggatctgtcaaatgtcgttcctctgaagaaacagctgggattttgtggaatggtctctgaaattctgaacaaactaggagaacaagacgttgcctcttcatttcattctccaattctgcaaatcatgctctcccttctctcaacatgtgttctggctcttgagcaaagagacatggttctaccacatctgatatctcaactgaagaccattcggcagttatccataaatcgactcactgaattctttgaattggagttggattttgacatcagacccatttgtgacgttctgttctcgtccgccgtgtggccacagatagagaaacttcatcaagaaagcattcaacgtccaacagcactactcaggcttttgttcgcttggtcaaagaattcccgctttttccctttgctatcaaggaaaccagttgaaaacccaaacttgtcaatcatgtcgtgcgtgtttgcctgtctgcgcgttcctttagtgtcagcagaggtagttgctatggtaatggagatgacagacaatcttctgtcaaacgttgcagaagaagaaattgattttctggaatgtggctctgaactagaactgcccacagattacagccagaaaaacagaccaacttatggaaccatgttggtccttcctcacctctcggaaatcctggaatacctcaatcggacagtgaaacaagcagttgaaaacaaaggcaagaacaaaggcaaattggtccttccatcacgcgagctttcagttctgtccaagataagtccatttgtgaaggacgcccagcagtctacaactctgctggaagtactgatacctttgttaaattcctctcaaaaggaagaatcggcgaacaacatcctgtcaactgtcaaaggtctgttagcaaatgttgactcacctagaaagattgccatgcttctgtcgaagcttttctcacagattaactttcgaagcacaagacagtgcttgtgtgaagtatttttggagcttgcaaatgttgacgttagcttctctttgaagtcgtccgagttactcggccaacttaactcgtggaatccgaagcgactcgaggaacctgactatgatacaagactctctgcctttgccaatgcaagagctcttcttgagcaaggagcactgaaaacagaggagattctgccattgctacacaacagtgtatacttcgttttaaacagcgatgacttgtcactgcgagacagtgctgggaactgtatgagttgtatcgtgcgacatgttgtacagcggaaggcagaaaaggatgacgcttttcatgttctgatcatgaaaaatctgcttccaatgtgcaagaaaggactcgcttcgaaaaaggaggttgctaggaacgagtttctcactctgctgtccacaatggttcgcgagtttaaccatgactccatgtcagacctaaaagttttactggacgaggatcccgagaaagacttttttgagaacatcaaacacattcagcttcatcgccgtaatcgagcgcttcgtcgcctgcagtcccattgtcagcagcatgccctcaggaccacgacgctgacgtcattcttgttgccattggtaactcactgtatatttgatcacacggctcccaaggagcataatacagttaccgaggcaatcaccaccattggagtgatatcggcgagccttccctggtccaaatactgttctctgctaagacgctatttaaaattacttcctgtggaaaagcagtttcagaaagtgattgttagaatcgttgtggccattttgaacaatttccactttgacctcagctccgtttcgattcaagttgaaagcaccaaaaccaccacaagctatgcagaaaagaaaagactacgcgaaaacgttaatgctgccgacgaaaaagcgggaggagatcgcaaagaccaaagtcacgacggagctgatgaaagcaatgatggtagtgtactgatggaaagtggcgaaaatgacgaccatgaggatgacgacgacgataacgatgatcttgctaaaggaaacacacaagacgcctctaacaaggatcttccgttgcgtatttataacacgatcacgacaaccattctgcctcagttgcggaagtatattaccaaaaagaggaagtcagatagttttcatcgtctgagtcagatgaaagctgaagatgaagaggaagtattgcgtgttcctatcattcttgctgccgtcaaacttctccaagccctgcctgagcgtgctctccacttacatctgcctggacttctgatgcgcgtgtgcctcacattgacgagcagagctagtgacgtgcgtactgcagcacgggatactctggcaaaaatcatgatttctcttggaatcaagtatttcccttttatgctgaaggaacttagaagttcactgaaaagaggataccagcttcatgtcctcagtttcacgttacatacgttgttggacaaaatgaacgataatctcagccctggtgatctggacccgactcttaagggtttagtggaggaaatgaattcctcaaacgaaacatgcaaagtcgatgatctgttttgcagcgcggaatccatagtggcagtccagtcaattaaggtatctctttatgtggtggtgatgctggtgtctttaatgggaaactccttcattgtagctgttgtctgtaagaatggccgaatgcgaacgccagtgaatttctttttagtcaacatgagcgtcgcagatatcctcatcaccattttttacatgccaagaatgattttaagaacttttctcggcacgaagtggggaattagtggggctcttggactgattctctgtaaagtggcgcctttcacgcaagaactttcagcttctgtatcaacactcactcttatggttatggcgttggatcgctttttcgcagttctgtttccctttaaacgcatcgttacaaatcatcttgcgtactgtttaattgtggttgtttggcttaccgctgtggcaattcgatcacccatgttccacggccttcatttcagaattggagaagaaggccaaactttctgttccttagaattcgactccgaagtggttttcaatctttatgtgaagttcgcatttgtcatgttctatgtgattcctttgttcgtcatcgtggttctctacagcgctgttttgatttcacttaaaaatcgaaaacctgttggcgtaaacttgtctagtattcgacgcaagtacagtcgtcacttcatacgcactcgcaaggtactcattgaagacctttttggtgctgcagccacaaatcgggaggtagagaagattgcaaacaagctacctgaggcaaagacctgcaagagctatgacgctttcgaaattcttggaaaatttgctgggacgcggtcgttgactcttttggtttctcctttgaaagcgatgctttacatgatgcttaaacatggaaaactttccacgtcagaccaggaacatctgcagatgttggatccatttgttgagttgcttactggctgcctggagtccaagtacaataaggtggtgaccatttcccttcgttgtgtcagcggcttggttaagtttccactgccctcattaacccgttgtgttcctaaaataggaaagaacctcttcaaattactcaagaattacgctaaagctggtgcaaaagttggcgagaactttgagatggttctgtctgccttcaaggccatgacggttatcatccgggacttcaaacatttcaaggtggcggagaagcatcttcaggtcctgttaggatttgtagaagaagatatccacgatcacaccaaacaggggacagccttttctcttctcaaggctattctttccagaaagctcatcgtacctgaaattcatgacgtcatgggaaaagtaggccaactctcaatcaccggtagctcggccaacattcagcttcaatccagacagtgtatgcttcaatttcttctggactatccactggggaaaaagctacaaagatacctagagttttatgtatctcagcttgggtatgaacacgagacaggtcgggaatcagctctggaaatgctggcatctatgttttcgtcctttcccgagacaatgcttgcagagtatgctggtttcttttttgtgccgctgacctttcacatggtgaatgatgactcggctaattgccgcaaggtgacggctcttacaataaagtcgctgttggagaagcttgacgcagatcaaagaaacaagttgttttctattgtgcttttgtggttcaaggatgacaaggtttctcttcagcgccttgctgcccaagtttgcggcttgtttgtcgaagttgaagggaagaatttcgaaaaaaaactggtgactttgctgccaatcatatctaacgcgatagcacctgagcaagttgaaacggaagagcctgtggaagatgaggaatcccacggcaattcccaagtatcccagcgaaccaaagatcatttgctctttaacgcgctctcgcttctggcaaaaatcatcaaggaatgtaatgtcattaagaatccaggcagacaacaagaaatggaaacaatatgggtatctgttgaagcgcatttactgcatccacattcttggatccgacttgtttccagtcgtttgctcggtcttctctttgctgcatgcaaagctgaggaactggtgattggttttcagagcggaaagacgtcagtcaattatcttcaggaggatttgccagggaaggtagcaaaactctgtagggacatgtccacgcagctacgttcaccacttttggacaacgaattgggggaacagattgttaagaatttagtcttcctggccaaaatactgcagattctgcacactgaagacgactcaggtaccaagaatgaccgagaggatcctgctgcaaccaaagaaaatgggaatcgtcgggaagatctaactcttaaagatgtgttgtacaacgtgaataagttagcaactttggaagcttccaaaaccccgaaacaaactcagaagagatcttgtgtgctgaggttgatggctgcaatctcagttcattttgggaaagatggcattgaaccgtaccttgtggacattttaagacctatctacagggagctggaaattcctgcaactttcaaagattctgatttaagagctctcgcgcaagaagctcttgaactcattaagagtcttgttggacgggaaactttgtctcaatcctacagcagtctgcgaaaggcagcctcacaaacgcgggaaacgcgcaagcgaaggcaagccctggaggcagtcgcggatccagcgaagagcgctcgaaagaaggtgaaaaagaatttggcgaaaaaggtctcaagaaaaagaaaaatcgattcctacagaccagaaaggaggataaaagcacctcggatgcaagagacataa

Transcript

g28447.t1

ATGTTGACAGAAGTCATTTTACACACTTGTACAGTGGATGTCAGTGGTCTTCAACTGGGGAATATACAAGGCCTTCTGTTCTTTCCAAAATGTGGCAGCAAGCAAGGTGCAGAGATATTGGAGGCTTTTCTGGATAATTTGACAGTGCAGAGTGATGCTTTAGTTGAAAATAGCCAGTTATCATTGATATGGGGCACTGTTTTGTGTCTTTCTTGCATCAGCCCATTAGACATTGCTCGCTGTTGTGAGAAGCTGCTTGAATTGATTCATTCAGTTACTGAGCagcttttatcaagtaataaaGAAACAAGAAACTCCGCAGCATGTCTGAGTATGCTTAGTCAAGCCATTCAGTCGTATTGTTGGCTAGTGTCCAGAGAAGAGCAGCTTACAATCCTCCTAGATTACAATTTCGCTCAGAAGTTAGTCAGCTCATGGCCTGACAATGTTTTCGTTCTTCAAGCATGTTACAAACTAGTGACAGTGGCAAGAAAACAAGGAATACAAAGCTTTCTAGCCGCCGGAAACCTCCAGGAGATCTACGGCTATGCCCGGCTAAATCTGTGCTCGGCTAGTCACGTTACACGCCTTCTGACTCTTAAGATACTGGCCTGTTTTGATCAAGAAGAAAAGGTAAATGCGccgtattcgtatccttacggTAGCACCAGAGCTCCTTCTTCCACCCAAGGCTCGCTGTTTCAATTGTGCGTGGAAGCTGAAGAAATTCCTGCACATTTCGAAACTTACAGAGACCGGCTAGCTTGTCTTCAGAAACTTCGCTTCATTAGAGCTTATTATGACACCATGCCAGAGTTTTGCCTTGAAGCTACTCTTCTCTACCTGTTCGGCATGCTTTACGTGAATTTAAATCTTCTGTGGGATCCTGTCATTGAAATCATCTCCAGTTTCACTCAAGGTTGCaataaaaagcttttttggaAAGTTTATAGCGAGCGTCTGATTGCAGCAGCAGAGAAAACAGaGAAGGAAGTAAACCAAGACTCAGCCGTCCATGAGCAAGCAGCCATCAGATATAGCGAATTGGCAGGCACCAAGCCCGTGAAGACCCTTGATGATATATTTGCTTGGCTCAACAGCGACTCTCTGGGTCCACGACAAGAAAACAGAGCCGACCACGCCAACTTTCGTTATCTGTTATGGAAAGCAATGGCCTCCTTTCCTGAGGTTGCGGAGCAGAATTCACGCGATGTAGTACCGTTGTTTCTTAGATTTGTCAGCAATGAATATTTCGTGGCGAATGAAAGCTCAGCACCTTCTCAAGACATCAGAGCCAAGCACTCGTCTGATCTGCAAGAGGTACCCCCCACAAATGAgatcaaccaatcagagctcGAAGCACCACAAGCAGAGAATCCCTGTACTGAACCACAAAACATCGTGTACAGAAAGAGCCACAGAGCAGCTGCGAAATCCTTGTGCATTCATCTCAGCTTATTCACGGCATTTAAAGGACCAAAATCACTGTTCAAAGAACCTGAGCTGAGACAGTTATATATGAGATTCTTGACGCAAAAAGAGAGCGAAGTTCAAAAGCTTGCGGTGAAGTGTCTCACGACTTACAAGTTTAATTACCTTCAGCCGTACAAGGAGAATGTTGAGCGCTTATTGGAGGACGAGAACTTTCGAGAAGAGTTGGCACATTTCTCCGTTGACGAGGAGAGAGGCATCGTGGACTCGAATCATCGAGAGGGGCTTATGCCAATCCTTATAAGGCTTTTGTACGGCAAAATGAAGAGATGGACTGGGACTGGCACAGGTGGAAAGGCTGGTGTCGGTACGAGGCGATCCGTGGTGCTGAGGTTCCTGGCCTCTTGTCCTCAGCATGAAATGCAAATATTCATGGATTTGATTTTAGCGCCATTCAAGCACCTTTACACAGtggaCAATCCAGGTCTGATTATTACCACGAAGGATCTGTCAAATGTCGTTCCTCTGAAGAAACAGCTGGGATTTTGTGGAATGGTCTCTGAAATTCTGAACAAACTAGGAGAACAAGACGTTGCCTCTTCATTTCATTCTCCAATTCTGCAAATCATGCTCTCCCTTCTCTCAACATGTGTTCTGGCTCTTGAGCAAAGAGACATGGTTCTACCACATCTGATATCTCAACTGAAGACCATTCGGCAGTTATCCATAAATCGACTCACTGAATTCTTTGAATTGGAGTTGGATTTTGACATCAGACCCATTTGTGACGTTCTGTTCTCGTCCGCCGTGTGGCCACAGATAGAGAAACTTCATCAAGAAAGCATTCAACGTCCAACAGCACTACTCAGGCTTTTGTTCGCTTGGTCAAAGAATTCCCGCTTTTTCCCTTTGCTATCAAGGAAACCAGTTGAAAACCCAAACTTGTCAATCATGTCGTGCGTGTTTGCCTGTCTGCGCGTTCCTTTAGTGTCAGCAGAGGTAGTTGCTATGGTAATGGAGATGACAGACAATCTTCTGTCAAACGTTGCAGAAGAAGAAATTGATTTTCTGGAATGTGGCTCTGAACTAGAACTGCCCACAGATTACAGCCAGAAAAACAGACCAACTTATGGAACCATGTTGGTCCTTCCTCACCTCTCGGAAATCCTGGAATACCTCAATCGGACAGTGAAACAAGCAGTTGAAAACAAAGGCAAGAACAAAGGCAAATTGGTCCTTCCATCACGCGAGCTTTCAGTTCTGTCCAAGATAAGTCCATTTGTGAAGGACGCCCAGCAGTCTACAACTCTGCTGGAAGTACTGATACCTTTGTTAAATTCCTCTCAAAAGGAAGAATCGGCGAACAACATCCTGTCAACTGTCAAAGGTCTGTTAGCAAATGTTGACTCACCTAGAAAGATTGCCATGCTTCTGTCGAAGCTTTTCTCACAGATTAACTTTCGAAGCACAAGACAGTGCTTGTGTGAAGTATTTTTGGAGCTTGCAAATGTTGACGTTAGCTTCTCTTTGAAGTCGTCCGAGTTACTCGGCCAACTTAACTCGTGGAATCCGAAGCGACTCGAGGAACCTGACTATGATACAAGACTCTCTGCCTTTGCCAATGCAAGAGCTCTTCTTGAGCAAGGAGCACTGAAAACAGAGGAGATTCTGCCATTGCTACACAACAGTGTATACTTCGTTTTAAACAGCGATGACTTGTCACTGCGAGACAGTGCTGGGAACTGTATGAGTTGTATCGTGCGACATGTTGTACAGCGGAAGGCAGAAAAGGATGACGCTTTTCATGTTCTGATCATGAAAAATCTGCTTCCAATGTGCAAGAAAGGACTCGCTTCGAAAAAGGAGGTTGCTAGGAACGAGTTTCTCACTCTGCTGTCCACAATGGTTCGCGAGTTTAACCATGACTCCATGTCAGACCTAAAAGTTTTACTGGACGAGGATCCCGAGAAAGACTTTTTTGAGAACATCAAACACATTCAGCTTCATCGCCGTAATCGAGCGCTTCGTCGCCTGCAGTCCCATTGTCAGCAGCATGCCCTCAGGACCACGACGCTGACGTCATTCTTGTTGCCATTGGTAACTCACTGTATATTTGATCACACGGCTCCCAAGGAGCATAATACAGTTACCGAGGCAATCACCACCATTGGAGTGATATCGGCGAGCCTTCCCTGGTCCAAATACTGTTCTCTGCTAAGACGCTATTTAAAATTACTTCCTGTGGAAAAGCAGTTTCAGAAAGTGATTGTTAGAATCGTTGTGGCCATTTTGAACAATTTCCACTTTGACCTCAGCTCCGTTTCGATTCAAGTTGAAAGCACCAAAACCACCACAAGCTATGCAGAAAAGAAAAGACTACGCGAAAACGTTAATGCTGCCGACGAAAAAGCGGGAGGAGATCGCAAAGACCAAAGTCACGACGGAGCTGATGAAAGCAATGATGGTAGTGTACTGATGGAAAGTGGCGAAAATGACGACCATGAGGATGACGACGACGATAACGATGATCTTGCTAAAGGAAACACACAAGACGCCTCTAACAAGGATCTTCCGTTGCGTATTTATAACACGATCACGACAACCATTCTGCCTCAGTTGCGGAAGTATATTACCAAAAAGAGGAAGTCAGATAGTTTTCATCGTCTGAGTCAGATGAAAGCTGAAGATGAAGAGGAAGTATTGCGTGTTCCTATCATTCTTGCTGCCGTCAAACTTCTCCAAGCCCTGCCTGAGCGTGCTCTCCACTTACATCTGCCTGGACTTCTGATGCGCGTGTGCCTCACATTGACGAGCAGAGCTAGTGACGTGCGTACTGCAGCACGGGATACTCTGGCAAAAATCATGATTTCTCTTGGAATCAAGTATTTCCCTTTTATGCTGAAGGAACTTAGAAGTTCACTGAAAAGAGGATACCAGCTTCATGTCCTCAGTTTCACGTTACATACGTTGTTGgacaaaatgaacgataatctCAGCCCTGGTGATCTGGACCCGACTCTTAAGGGTTTAGTGGAGGAAATGAATTCCTCAAACGAAACATGCAAAGTCGATGATCTGTTTTGCAGCGCGGAATCCATAGTGGCAGTCCAGTCAATTAAGGTATCTCTTTATGTGGTGGTGATGCTGGTGTCTTTAATGGGAAACTCCTTCATTGTAGCTGTTGTCTGTAAGAATGGCCGAATGCGAACGCCAGTGAATTTCTTTTTAGTCAACATGAGCGTCGCAGATATCCTCATCACCATTTTTTACATGCCAAGAATGATTTTAAGAACTTTTCTCGGCACGAAGTGGGGAATTAGTGGGGCTCTTGGACTGATTCTCTGTAAAGTGGCGCCTTTCACGCAAGAACTTTCAGCTTCTGTATCAACACTCACTCTTATGGTTATGGCGTTGGATCGCTTTTTCGCAGTTCTGTTTCCCTTTAAACGCATCGTTACAAATCATCTTGCGTACTGTTTAATTGTGGTTGTTTGGCTTACCGCTGTGGCAATTCGATCACCCATGTTCCACGGCCTTCATTTCAGAATTGGAGAAGAAGGCCAAACTTTCTGTTCCTTAGAATTCGACTCCGAAGTGGTTTTCAATCTTTATGTGAAGTTCGCATTTGTCATGTTCTATGTGATTCCTTTGTTCGTCATCGTGGTTCTCTACAGCGCTGTTTTGATTTCACTTAAAAATCGAAAACCTGTTGGCGTAAACTTGTCTAGTATTCGACGCAAGTACAGTCGTCACTTCATACGCACTCGCAAGgTACTCATTGAAGACCTTTTTGGTGCTGCAGCCACAAATCGGGAGGTAGAGAAGATTGCAAACAAGCTACCTGAGGCAAAGACCTGCAAGAGCTATGACGCTTTCGAAATTCTTGGAAAATTTGCTGGGACGCGGTCGTTGACTCTTTTGGTTTCTCCTTTGAAAGCGATGCTTTACATGATGCTTAAACATGGAAAACTTTCCACGTCAGACCAGGAACATCTGCAGATGTTGGATCCATTTGTTGAGTTGCTTACTGGCTGCCTGGAGTCCAAGTACAATAAGGTGGTGACCATTTCCCTTCGTTGTGTCAGCGGCTTGGTTAAGTTTCCACTGCCCTCATTAACCCGTTGTGTTCCTAAAATAGGAAAGAACCTCTTCAAATTACTCAAGAATTACGCTAAAGCTGGTGCAAAAGTTGGCGAGAACTTTGAGATGGTTCTGTCTGCCTTCAAGGCCATGACGGTTATCATCCGGGACTTCAAACATTTCAAGGTGGCGGAGAAGCATCTTCAGGTCCTGTTAGGATTTGTAGAAGAAGATATCCACGATCACACCAAACAGGGGACAGCCTTTTCTCTTCTCAAGGCTATTCTTTCCAGAAAGCTCATCGTACCTGAAATTCATGACGTCATGGGAAAAGTAGGCCAACTCTCAATCACCGGTAGCTCGGCCAACATTCAGCTTCAATCCAGACAGTGTATGCTTCAATTTCTTCTGGACTATCCACTGGGGAAAAAGCTACAAAGATACCTAGAGTTTTATGTATCTCAGCTTGGGTATGAACACGAGACAGGTCGGGAATCAGCTCTGGAAATGCTGGCATCTATGTTTTCGTCCTTTCCCGAGACAATGCTTGCAGAGTATGCTGGTTTCTTTTTTGTGCCGCTGACCTTTCACATGGTGAATGATGACTCGGCTAATTGCCGCAAGGTGACGGCTCTTACAATAAAGTCGCTGTTGGAGAAGCTTGACGCAGATCAaagaaacaagttgttttctaTTGTGCTTTTGTGGTTCAAGGATGACAAGGTTTCTCTTCAGCGCCTTGCTGCCCAAGTTTGCGGCTTGTTTGTCGAAGTTGAAGGGAAGAATTTCGAAAAAAAACTGGTGACTTTGCTGCCAATCATATCTAACGCGATAGCACCTGAGCAAGTTGAAACGGAAGAGCCTGTGGAAGATGAGGAATCCCACGGCAATTCCCAAGTATCCCAGCGAACCAAAGATCATTTGCTCTTTAACGCGCTCTCGCTTCTGGCAAAAATCATCAAGGAATGTAATGTCATTAAGAATCCAGGCAGACAACAAGAAATGGAAACAATATGGGTATCTGTTGAAGCGCATTTACTGCATCCACATTCTTGGATCCGACTTGTTTCCAGTCGTTTGCTCGGTCTTCTCTTTGCTGCATGCAAAGCTGAGGAACTGGTGATTGGTTTTCAGAGCGGAAAGACGTCAGTCAATTATCTTCAGGAGGATTTGCCAGGGAAGGTAGCAAAACTCTGTAGGGACATGTCCACGCAGCTACGTTCACCACTTTTGGACAACGAATTGGGGGAACAGATTGTTAAGAATTTAGTCTTCCTGGCCAAAATACTGCAGATTCTGCACACTGAAGACGACTCAGGTACCAAGAATGACCGAGAGGATCCTGCTGCAACCAAAGAAAATGGGAATCGTCGGGAAGATCTAACTCTTAAAGATGTGTTGTACAACGTGAATAAGTTAGCAACTTTGGAAGCTTCCAAAACCCCGAAACAAACTCAGAAGAGATCTTGTGTGCTGAGGTTGATGGCTGCAATCTCAGTTCATTTTGGGAAAGATGGCATTGAACCGTACCTTGTGGACATTTTAAGACCTATCTACAGGGAGCTGGAAATTCCTGCAACTTTCAAAGATTCTGATTTAAGAGCTCTCGCGCAAGAAGCTCTTGAACTCATTAAGAGTCTTGTTGGACGGGAAACTTTGTCTCAATCCTACAGCAGTCTGCGAAAGGCAGCCTCACAAACGCGGGAAACGCGCAAGCGAAGGCAAGCCCTGGAGGCAGTCGCGGATCCAGCGAAGAGCGCTCGAAAGAAGGTGAAAAAGAATTTGGCGAAAAAGGtctcaagaaaaagaaaaatcgatTCCTACAGACCAGAAAGGAGGATAAAAGCACCTCGGATGCAAGagacataa

Protein

g28447.t1

MLTEVILHTCTVDVSGLQLGNIQGLLFFPKCGSKQGAEILEAFLDNLTVQSDALVENSQLSLIWGTVLCLSCISPLDIARCCEKLLELIHSVTEQLLSSNKETRNSAACLSMLSQAIQSYCWLVSREEQLTILLDYNFAQKLVSSWPDNVFVLQACYKLVTVARKQGIQSFLAAGNLQEIYGYARLNLCSASHVTRLLTLKILACFDQEEKVNAPYSYPYGSTRAPSSTQGSLFQLCVEAEEIPAHFETYRDRLACLQKLRFIRAYYDTMPEFCLEATLLYLFGMLYVNLNLLWDPVIEIISSFTQGCNKKLFWKVYSERLIAAAEKTEKEVNQDSAVHEQAAIRYSELAGTKPVKTLDDIFAWLNSDSLGPRQENRADHANFRYLLWKAMASFPEVAEQNSRDVVPLFLRFVSNEYFVANESSAPSQDIRAKHSSDLQEVPPTNEINQSELEAPQAENPCTEPQNIVYRKSHRAAAKSLCIHLSLFTAFKGPKSLFKEPELRQLYMRFLTQKESEVQKLAVKCLTTYKFNYLQPYKENVERLLEDENFREELAHFSVDEERGIVDSNHREGLMPILIRLLYGKMKRWTGTGTGGKAGVGTRRSVVLRFLASCPQHEMQIFMDLILAPFKHLYTVDNPGLIITTKDLSNVVPLKKQLGFCGMVSEILNKLGEQDVASSFHSPILQIMLSLLSTCVLALEQRDMVLPHLISQLKTIRQLSINRLTEFFELELDFDIRPICDVLFSSAVWPQIEKLHQESIQRPTALLRLLFAWSKNSRFFPLLSRKPVENPNLSIMSCVFACLRVPLVSAEVVAMVMEMTDNLLSNVAEEEIDFLECGSELELPTDYSQKNRPTYGTMLVLPHLSEILEYLNRTVKQAVENKGKNKGKLVLPSRELSVLSKISPFVKDAQQSTTLLEVLIPLLNSSQKEESANNILSTVKGLLANVDSPRKIAMLLSKLFSQINFRSTRQCLCEVFLELANVDVSFSLKSSELLGQLNSWNPKRLEEPDYDTRLSAFANARALLEQGALKTEEILPLLHNSVYFVLNSDDLSLRDSAGNCMSCIVRHVVQRKAEKDDAFHVLIMKNLLPMCKKGLASKKEVARNEFLTLLSTMVREFNHDSMSDLKVLLDEDPEKDFFENIKHIQLHRRNRALRRLQSHCQQHALRTTTLTSFLLPLVTHCIFDHTAPKEHNTVTEAITTIGVISASLPWSKYCSLLRRYLKLLPVEKQFQKVIVRIVVAILNNFHFDLSSVSIQVESTKTTTSYAEKKRLRENVNAADEKAGGDRKDQSHDGADESNDGSVLMESGENDDHEDDDDDNDDLAKGNTQDASNKDLPLRIYNTITTTILPQLRKYITKKRKSDSFHRLSQMKAEDEEEVLRVPIILAAVKLLQALPERALHLHLPGLLMRVCLTLTSRASDVRTAARDTLAKIMISLGIKYFPFMLKELRSSLKRGYQLHVLSFTLHTLLDKMNDNLSPGDLDPTLKGLVEEMNSSNETCKVDDLFCSAESIVAVQSIKVSLYVVVMLVSLMGNSFIVAVVCKNGRMRTPVNFFLVNMSVADILITIFYMPRMILRTFLGTKWGISGALGLILCKVAPFTQELSASVSTLTLMVMALDRFFAVLFPFKRIVTNHLAYCLIVVVWLTAVAIRSPMFHGLHFRIGEEGQTFCSLEFDSEVVFNLYVKFAFVMFYVIPLFVIVVLYSAVLISLKNRKPVGVNLSSIRRKYSRHFIRTRKVLIEDLFGAAATNREVEKIANKLPEAKTCKSYDAFEILGKFAGTRSLTLLVSPLKAMLYMMLKHGKLSTSDQEHLQMLDPFVELLTGCLESKYNKVVTISLRCVSGLVKFPLPSLTRCVPKIGKNLFKLLKNYAKAGAKVGENFEMVLSAFKAMTVIIRDFKHFKVAEKHLQVLLGFVEEDIHDHTKQGTAFSLLKAILSRKLIVPEIHDVMGKVGQLSITGSSANIQLQSRQCMLQFLLDYPLGKKLQRYLEFYVSQLGYEHETGRESALEMLASMFSSFPETMLAEYAGFFFVPLTFHMVNDDSANCRKVTALTIKSLLEKLDADQRNKLFSIVLLWFKDDKVSLQRLAAQVCGLFVEVEGKNFEKKLVTLLPIISNAIAPEQVETEEPVEDEESHGNSQVSQRTKDHLLFNALSLLAKIIKECNVIKNPGRQQEMETIWVSVEAHLLHPHSWIRLVSSRLLGLLFAACKAEELVIGFQSGKTSVNYLQEDLPGKVAKLCRDMSTQLRSPLLDNELGEQIVKNLVFLAKILQILHTEDDSGTKNDREDPAATKENGNRREDLTLKDVLYNVNKLATLEASKTPKQTQKRSCVLRLMAAISVHFGKDGIEPYLVDILRPIYRELEIPATFKDSDLRALAQEALELIKSLVGRETLSQSYSSLRKAASQTRETRKRRQALEAVADPAKSARKKVKKNLAKKVSRKRKIDSYRPERRIKAPRMQET

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75691	Small subunit processome component 20 homolog OS=Homo sapiens OX=9606 GN=UTP20 PE=1 SV=3
Q5XG71	Small subunit processome component 20 homolog OS=Mus musculus OX=10090 GN=Utp20 PE=1 SV=2
O60055	U3 small nucleolar RNA-associated protein 20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp20 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002643 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07539 all species →	UTP20_N	U3 small nucleolar RNA-associated protein 20, N-terminal	Domain	Interproscan
PF20416 all species →	UTP20_C	U3 small nucleolar RNA-associated protein 20, C-terminal	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052575 all species →	Family	Small subunit processome component 20	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR011430 all species →	Domain	U3 small nucleolar RNA-associated protein 20, N-terminal	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR046523 all species →	Domain	U3 small nucleolar RNA-associated protein 20, C-terminal	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17695 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14772	UTP20; U3 small nucleolar RNA-associated protein 20	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g28447.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

34.4Max TPM

12.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	13.99	34.43
whole organisms · low pH treatment	15	15	10.48	17.68
whole organisms · extra low pH treatment pH treatment	12	12	11.10	22.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	34.43
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	28.33
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	27.25
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	24.63
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	22.00
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	21.54
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	20.70
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	19.80
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	16.23
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	15.42
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	15.04
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	14.12
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	13.68
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	4.68
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	3.78
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.55
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.51
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.32
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.26
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	1.29
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.26
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	17.68
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	17.68
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	17.61
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	15.89
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	15.52
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	15.12
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	14.61
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	13.24
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	10.34
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	5.51
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.96
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.85
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	2.81
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	2.72
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	2.67
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	22.53
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	21.99
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	18.84
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	15.77
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	15.18
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	13.42
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	12.33
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	3.30
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	3.15
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.57
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.30
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.83

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.