Gene detail

Detailed information of g28575.t1 in Montipora capitata

Genomic Location: xfSc0000194:4439...25115
NR annotation: XP_029184506.2, lysine-specific demethylase 2B-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g28575.t1

atgagcgtgggtggttgctacactgattttcatatcgattttggaggaacgtccgtgtggtaccatatcatgcggggccggaaggtgttttggctgattccacccaccgagaagaacctgcatttgtacgaacagtgggttttgtctggaaaacagcagaatgttttctttggtgatcaagtggaaaagtgttgccgcacttacttggaggcaggagatacgttcttaatacccacaggttggattcatgcagtgttcactccagatgattctcttgtgtttggcggtaattttattcacagttataacatccttgggcaaattaaaatcagcgagattgaggataatacaaaggttcccctcaagttccgttatcctttcttggctcaaatcatgtggtatgcggcggacaagtacttgcgccttttagagaaagataaaaccgaacggggcttatctttgacaccgaagaaacagaacgctgtaacatttaaggccaaagaaacggtaggcagcagagcaaggtcggccaacaaacgtgtggcaagaacggatggcgaagaaaacagggaagctggtttgtccgcggtgaaagagagcgtggaagacgacgcaaacgagacgccgggccgtcggcgatctagtcgagtagctaaaaacgaggcgactttcagacaggaacatgaaaacgaagagagagaaaaggctgtaaagaaagaggagagcgagaggggtagcgtgaagagaagagcagcaaagaaaagtaaagataacgaagatacgatggatgttaacggtgaaaatcatgatgtagaggatgcgaacgaaaaaggttctccagaagacaacgaagaggaggaagataaattgccctggcgtcctgtctatctgactcggtttgaagttgatggcttatttaagttgatagaaaaactaaggaattggcctcaggctaagaagaatgttccagcaactttggaagatccttgtggacttttggatagactggaggaactggttgaactgcatagtgatgatgatcaaactctcgcagcttcgggactgcagcatctgttgcagattgataaacctacacagaaaaagacggctaaaaaatatgctgcaagaggacctatgattggcaccaaagtcggtcctggaataagacgccgtcgcactcggtgtggccagtgtgagaactgtcagcgagaagactgtggcgagtgcaagacctgtaaagatatgaaaaaatttggaggacctggaagaatgaagcagtcttgtcaaatgcgagtttgcactgatccgaatcttccgacctgtgtgcggtgtttggtttgtaaaagagagaataccgaagagcatccactaatggaatgcaggttttgtggtgaaattatgcatccctcatgtgtggaggacaatactgcaccctgcaaaattgtaactgaaattaacaactgttgggagtgcccaaaatgcttcaaggaaggagaagcggcgtcttctgttgaggatgtggccagctctcctaccaagaagcgaaaggccagtccgttgaaagaatcttcgaaaaagataaaaaatagtcaacatgctgaaagtgacaaacattcgaagaacaaaacagagaacgagtcctcagaggaagaaagtgacatttcccttgttgctgagagtgatgaagttacagcttcacgcattcgccgtcctgttgctgtgcccaaacctccgcctggtccccctccggaggttcgacccaagcggatcgtccgtccgtgtccactttctcctacgcctgagtctttttccttagaaaacggccaaagtcacctgatggtcagacagttgtggctgttagtgtttagctttttctcacagcctgagctgtgcacgtgcatgcgcgtttgtcgcacatggaatcgctggtgcatggatcgccggctttggtctgtgattgacctttcggagaagagagttgtctcacctgccgcccttcggggaatcgttcgacgccagccaaccactctaaaccttagttggacaaacgtttcttttcagcaaataaaatggctgttggtccgccttcccagaatccgtgagctttacctgagtggcactacagaagccactgtgtacgcgctctcttctgtcatctgcccgcggctcaaagttctaggtctgagttggtccgtgggaatcacagacgcgttattgaaagagctcattttacctgtttccgactctcgtgttggcgctggggagagcaaaagtccctttttgaaattgacgacgttattcctatccgggtgtgacgtcactggagcaacccttcgcttattggttcaacactgccctgacttgcgcaaactggacttgagcttctgtcctggattgaccgatcaagatatagaaagtgtttgcggccaagccttgatcaacgagtttctcctcagcggctgtcctaaactgtcagacaaagccttctccttttttaggctttttccacctatctttcgtctcgatcttcgctcttgcaatggtgtcacgtcagatgctgtccaagaatttgtaaaatgtcgcaaggatctgctaaaaattgtagaggacaaacttattgtaaacgcgtaa

Transcript

g28575.t1

ATGAGCGTGGGTGGTTGCTACACTGATTTTCATATCGATTTTGGAGGAACGTCCGTGTGGTACCATATCATGCGGGGCCGGAAGGTGTTTTGGCTGATTCCACCCACCGAGAAGAACCTGCATTTGTACGAACAGTGGGTTTTGTCTGGAAAACAGCAGAATGTTTTCTTTGGTGATCAAGTGGAAAAGTGTTGCCGCACTTACTTGGAGGCAGGAGATACGTTCTTAATACCCACAGGTTGGATTCATGCAGTGTTCACTCCAGATGATTCTCTTGTGTTTGGCGGTAATTTTATTCACAGTTATAACATCCTTGGGCAAATTAAAATCAGCGAGATTGAGGATAATACAAAGGTTCCCCTCAAGTTCCGTTATCCTTTCTTGGCTCAAATCATGTGGTATGCGGCGGACAAGTACTTGCGCCTTTTAGAGAAAGATAAAACCGAACGGGGCTTATCTTTGACACCGAAGAAACAGAACGCTGTAACATTTAAGGCCAAAGAAACGGTAGGCAGCAGAGCAAGGTCGGCCAACAAACGTGTGGCAAGAACGGATGGCGAAGAAAACAGGGAAGCTGGTTTGTCCGCGGTGAAAGAGAGCGTGGAAGACGACGCAAACGAGACGCCGGGCCGTCGGCGATCTAGTCGAGTAGCTAAAAACGAGGCGACTTTCAGACAGGAACATGAAAACGAAGAGAGAGAAAAGGCTGTAAAGAAAGAGGAGAGCGAGAGGGGTAGCGTGAAGAGAAGAGCAGCAAAGAAAAGTAAAGATAACGAAGATACGATGGATGTTAACGGTGAAAATCATGATGTAGAGGATGCGAACGAAAAAGGTTCTCCAGAAGACAACGAAGAGGAGGAAGATAAATTGCCCTGGCGTCCTGTCTATCTGACTCGGTTTGAAGTTGATGGCTTATTTAAGTTGATAGAAAAACTAAGGAATTGGCCTCAGGCTAAGAAGAATGTTCCAGCAACTTTGGAAGATCCTTGTGGACTTTTGGATAGACTGGAGGAACTGGTTGAACTGCATAGTGATGATGATCAAACTCTCGCAGCTTCGGGACTGCAGCATCTGTTGCAGATTGATAAACCTACACAGAAAAAGACGGCTAAAAAATATGCTGCAAGAGGACCTATGATTGGCACCAAAGTCGGTCCTGGAATAAGACGCCGTCGCACTCGGTGTGGCCAGTGTGAGAACTGTCAGCGAGAAGACTGTGGCGAGTGCAAGACCTGTAAAGATATGAAAAAATTTGGAGGACCTGGAAGAATGAAGCAGTCTTGTCAAATGCGAGTTTGCACTGATCCGAATCTTCCGACCTGTGTGCGGTGTTTGGTTTGTAAAAGAGAGAATACCGAAGAGCATCCACTAATGGAATGCAGGTTTTGTGGTGAAATTATGCATCCCTCATGTGTGGAGGACAATACTGCACCCTGCAAAATTgtaactgaaattaacaactgTTGGGAGTGCCCAAAATGCTTCAAGGAAGGAGAAGCGGCGTCTTCTGTTGAGGATGTGGCCAGCTCTCCTACCAAGAAGCGAAAGgCCAGTCCGTTGAAAGAATCTTCGAAAAAGataaaAAATAGTCAACATGCTGAAAGTGACAAACATTCGAAGAACAAAACAGAGAACGAGTCCTCAGAGGAAGAAAGTGACATTTCCCTTGTTGCTGAGAGTGATGAAGTTACAGCTTCACGCATTCGCCGTCCTGTTGCTGTGCCCAAACCTCCGCCTGGTCCCCCTCCGGAGGTTCGACCCAAGCGGATCGTCCGTCCGTGTCCACTTTCTCCTACGCCTGAGTCTTTTTCCTTAGAAAACGGCCAAAGTCACCTGATGGTCAGACAGTTGTGGCTGTTAGTGTTTAGCTTTTTCTCACAGCCTGAGCTGTGCACGTGCATGCGCGTTTGTCGCACATGGAATCGCTGGTGCATGGATCGCCGGCTTTGGTCTGTGATTGACCTTTCGGAGAAGAGAGTTGTCTCACCTGCCGCCCTTCGGGGAATCGTTCGACGCCAGCCAACCACTCTAAACCTTAGTTGGACAAACGTTTCTTTTCAGCAAATAAAATGGCTGTTGGTCCGCCTTCCCAGAATCCGTGAGCTTTACCTGAGTGGCACTACAGAAGCCACTGTGTACGCGCTCTCTTCTGTCATCTGCCCGCGGCTCAAAGTTCTAGGTCTGAGTTGGTCCGTGGGAATCACAGACGCGTTATTGAAAGAGCTCATTTTACCTGTTTCCGACTCTCGTGTTGGCGCTGGGGAGAGCAAAAGTCCCTTTTTGAAATTGACGACGTTATTCCTATCCGGGTGTGACGTCACTGGAGCAACCCTTCGCTTATTGGTTCAACACTGCCCTGACTTGCGCAAACTGGACTTGAGCTTCTGTCCTGGATTGACCGATCAAGATATAGAAAGTGTTTGCGGCCAAGCCTTGATCAACGAGTTTCTCCTCAGCGGCTGTCCTAAACTGTCAGACAAAGCCTTCTCCTTTTTTAGGCTTTTTCCACCTATCTTTCGTCTCGATCTTCGCTCTTGCAATGGTGTCACGTCAGATGCTGTCCAAGAATTTGTAAAATGTCGCAAGGATCTGCTAAAAATTGTAGAGGACAAACTTATTGTAAACGCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q640I9	Lysine-specific demethylase 2B OS=Xenopus laevis OX=8355 GN=kdm2b PE=2 SV=1
Q8NHM5	Lysine-specific demethylase 2B OS=Homo sapiens OX=9606 GN=KDM2B PE=1 SV=1
Q9Y2K7	Lysine-specific demethylase 2A OS=Homo sapiens OX=9606 GN=KDM2A PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001471 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16866 all species →	PHD_4	PHD-finger	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF02008 all species →	zf-CXXC	CXXC zinc finger domain	Domain	Interproscan
PF17811 all species →	JHD	Jumonji helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR002857 all species →	Domain	Zinc finger, CXXC-type	Interproscan
IPR050690 all species →	Family	JHDM1 Histone Demethylase	Interproscan
IPR041070 all species →	Domain	Jumonji, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23123 all species →	PHD/F-BOX CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006482 all species →	Biological Process	protein demethylation	Interproscan
GO:0032452 all species →	Molecular Function	histone demethylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g28575.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.