Gene detail

Detailed information of g28598.t1 in Acropora digitifera

Genomic Location: chr13Alt:22323629...22332236
NR annotation: XP_044169701.1, choline dehydrogenase, mitochondrial-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr13Alt.g28598.t1

CAGTGCTCTCTACGTCGAAGCTTCGAACGCCTGAGAAGAGTACGAACTCCGAGAAAATACCTAGATATTTCCCGATGTCGTCTCGGTGAAATTTATAGCAACAAGGATATTATCAATGGCTTTGTTATTAATTTCAAGATGTACAGTTAAGAGTATCAAAACATCAGTACTTAGAAAAATAGAAGTTTACCACCCTTCTTTCCATCAAAGATGTCTTGTCTCCACCTTGAAGTTTTCATCATCTCATGACTATGTTATTTGTGGGGCTGGGTCAGCAGGTTGTGTTCTAGCCAATCGTTTGTCTGCAAACCCAGACAACAAAGTGATTTTATTGGAGGCAGGACCTAAAGATTGGACGTGGAAAATTCACATGCCGGCTGCTCTTATTTATAATCTTTGTGATAACAAATATAACTGGTATTATGAAACAGAGCCACAAAAGAATATGGACAACAGGCGGATTTACCAACCAAGAGGAAGAGTTTGGGGGGGATCATCATCATTAAATGCCATGGTGTACATCAGGGGACACGCTTATGATTATGATCGTTGGGAGCAGGAAGGTGCTAAAGGCTGGTCATATGCTGACTGCTTGCCATACTTTAGGAAATCACAGACTCATGAATTAGGTCCAGATGATTATAGAGGTGGAGATGGTCCTCTCCATGTATCAAGAGGTAAATCGGACAATCCTCTTTATCAAGCCTTCATCGACGCTGGTGTTCAAGCGGGTTATCCTTTTACAGAAGACATGAATGGGTACCAACAAGAAGGATTTGGTTGGATGGATATGACAATCCATAAAGGTGTTCGATGGAATACGGCTAATGCTTATCTGAGACCTGCTCTAAAGCGAAAGAATCTTCGAACTGATACTAAAGCAATGATTACGAGGGTATTGTTTGAGAACAACCGAGCTGTTGGTGTGGAATACCATTATCAAAATCAATTAAAGCGAGCGAGGGCTAGAAAAGGAGTTATTTTAACATCTGGAGCTGTGAACACACCTCAGCTTCTCAACTTATCTGGTATTGGAAATGCAGATGATTTAAAGAAACTTGGGATTCCTGTGATAGCTAATCTTCCTGGTGTTGGGCAGAATTTCCAGGATCATTTGGAGATGTACTTTCATCAAGAATGTACAAAACCATTGAGTTTATATCGTTCTCTCAAGTGGTGGAACATGATACCAATTGGTGTCCAATGGTTTCTTACCAGGAAAGGACCTTGTGCTTCTGCACACCTGGAGGCTGGTGGATTCATTCGCTCTAGGGAAGGCTTTACTCATCCTAATATTCAATACCACTTTCTCCCATCAGCTTTCAAAGATCATGGAAGGGTGACAGTGGAGACAGAAGCCTTTCAAGTCCACGTTGGTTCCATGCGAGCCACAAGTCGAGGATATGTGAAGCTCAGAACAGCTAATCCTTATGATCACCCCATAATTGACCCAAATTATATGGCAACAGAGGAAGATAGAGTTGAGTTACGGGAATCTGTTCGACTTACAAGGGAAATATTCGGGCAAAAGGCTTTTGATCCATTCCGTGGAAAAGAATTGCAACCAGGTAACGACATCCAGACTAATGAACAGATAGATGCTTGGGTCCGACAGAATGCTGACACTGCATATCATCCATCTTGTACTTGCAAGATGGGCTCAGAGGATGACCCCTTGGCAGTTGTCAACAGCAAAACACAGGTAATTGGTGTGGAAAACCTCAATATTGTTGATTCATCCATCATGCCAAGTATTGTGAGTGGAAACCTTAATGGTCCCACTGTGATGATGGCTGAAAAAGCAGCTGATATCCTCCTGGGGAATACCCCATTGGCAAAATCTACAGCTCCAGTGTATAAAACCCCAGAAAAAGGACAAAGGTAGCTGTTTGCCATTCTACGGACAGGATTTTATTATGGCACATTAATTGCTTAAAAATGTGAGGAATAGAAAGAAGCAGCTGGATGCCTTCCTGGTAAAAGAGAAACTGGAAAAGTCAATTGTCTCAATAATGTACTTTCCTTGGGTTGAGGGTGTGGCTTTCCAGTGACAAACTACCAATACGATCAACAATGTTTTGAAAAGAAAATGAACAGTATCTTTGCTTTGTTTTCATACAGTGTATGGTCTTTAAATTCTAGTATTTATGTTGTGGAAATGCTTATTTTACTGATTCCTAGCTTTACTATTAATATTCAATAAACTTTATTTTCAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6UPE0	Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
Q8BJ64	Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
Q8NE62	Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00732 all species →	GMC_oxred_N	GMC oxidoreductase	Domain	Interproscan
PF05199 all species →	GMC_oxred_C	GMC oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000172 all species →	Domain	Glucose-methanol-choline oxidoreductase, N-terminal	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR012132 all species →	Family	Glucose-methanol-choline oxidoreductase	Interproscan
IPR007867 all species →	Domain	Glucose-methanol-choline oxidoreductase, C-terminal	Interproscan
IPR011533 all species →	Family	Oxygen-dependent choline dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11552 all species →	GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016614 all species →	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0008812 all species →	Molecular Function	choline dehydrogenase activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0019285 all species →	Biological Process	glycine betaine biosynthetic process from choline	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g28598.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.