Gene detail

Detailed information of g286.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_004206187.2, fibroblast growth factor 17 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2W0C1	Protein translocase subunit SecA OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=secA PE=3 SV=1
A7HTW6	Protein translocase subunit SecA OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=secA PE=3 SV=2
Q2RXV5	Protein translocase subunit SecA OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=secA PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000012 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000329 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000437 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000450 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000462 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001952 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002940 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003206 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003734 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004763 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009595 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0010693 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan
PF00167 all species →	FGF	Fibroblast growth factor	Domain	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF01043 all species →	SecA_PP_bind	SecA preprotein cross-linking domain	Domain	Interproscan
PF07516 all species →	SecA_SW	SecA Wing and Scaffold domain	Family	Interproscan
PF07517 all species →	SecA_DEAD	SecA DEAD-like domain	Domain	Interproscan
PF02810 all species →	SEC-C	SEC-C motif	Family	Interproscan
PF21090 all species →	P-loop_SecA	SecA P-loop domain	Domain	Interproscan
PF06367 all species →	Drf_FH3	Diaphanous FH3 Domain	Repeat	Interproscan
PF06371 all species →	Drf_GBD	Diaphanous GTPase-binding Domain	Repeat	Interproscan
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012725 all species →	Family	Chaperone DnaK	Interproscan
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR029048 all species →	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR018181 all species →	Conserved_site	Heat shock protein 70, conserved site	Interproscan
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR002209 all species →	Family	Fibroblast growth factor family	Interproscan
IPR008996 all species →	Homologous_superfamily	Cytokine IL1/FGF	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000185 all species →	Family	Protein translocase subunit SecA	Interproscan
IPR011130 all species →	Domain	SecA, preprotein cross-linking domain	Interproscan
IPR011116 all species →	Domain	SecA Wing/Scaffold	Interproscan
IPR011115 all species →	Domain	SecA DEAD-like, N-terminal	Interproscan
IPR004027 all species →	Conserved_site	SEC-C motif	Interproscan
IPR036670 all species →	Homologous_superfamily	SecA, preprotein cross-linking domain superfamily	Interproscan
IPR020937 all species →	Conserved_site	SecA conserved site	Interproscan
IPR014018 all species →	Domain	SecA motor DEAD	Interproscan
IPR044722 all species →	Domain	SecA, C-terminal helicase domain	Interproscan
IPR036266 all species →	Homologous_superfamily	SecA, Wing/Scaffold superfamily	Interproscan
IPR052035 all species →	Family	Zinc finger BED domain-containing	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR010472 all species →	Domain	Formin, FH3 domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR010473 all species →	Domain	Formin, GTPase-binding domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR014767 all species →	Domain	Diaphanous autoregulatory (DAD) domain	Interproscan
IPR014768 all species →	Domain	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	Interproscan
IPR051425 all species →	Family	Formin Homology	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036716 all species →	Homologous_superfamily	Pesticidal crystal protein, N-terminal domain superfamily	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR052666 all species →	Family	Cytochrome P450 20A1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19375 all species →	HEAT SHOCK PROTEIN 70KDA	Interproscan
PTHR11486 all species →	FIBROBLAST GROWTH FACTOR	Interproscan
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan
PTHR30612 all species →	SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM	Interproscan
PTHR46481 all species →	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR45725 all species →	FORMIN HOMOLOGY 2 FAMILY MEMBER	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR24280 all species →	CYTOCHROME P450 20A1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0006605 all species →	Biological Process	protein targeting	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0017038 all species →	Biological Process	protein import	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0031522 all species →	Cellular Component	cell envelope Sec protein transport complex	Interproscan
GO:0043952 all species →	Biological Process	protein transport by the Sec complex	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0016043 all species →	Biological Process	cellular component organization	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0090729 all species →	Molecular Function	toxin activity	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03070	secA; preprotein translocase subunit SecA	EC:7.4.2.8	Secretion system	ko02044	deepkoala
K04043	dnaK, HSPA9; molecular chaperone DnaK	-	Exosome	ko04147	deepkoala
K04512	DAAM; dishevelled associated activator of morphogenesis	-	Exosome	ko04147	deepkoala
K14425	SLC12A1, NKCC2; solute carrier family 12 (sodium/potassium/chloride transporter), member 1	-	Exosome	ko04147	deepkoala
K19367	SPG21; maspardin	-	Endocytosis	ko04144	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →