Gene detail

Detailed information of g2860.t2 in Acropora digitifera

Genomic Location: chr2Alt:5350845...5368036
NR annotation: XP_044176947.1, protein O-mannosyl-transferase 1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2860.t2

ATGTCGGGTGAGTTGGCAGGATCAGATGACGTCGACGCAAAGTATAATCCTCCAGATGAGAAACCTAAATCAAGCAGAACTGCAAATGGTCTGGCGCAGGAAATACATTTGCAGAAAGTGGAAAAAAGATACTCATACCAACAGCCAAGAAGCAGTGATATTCCACCTCTCACCATGAATGTGGAGCTGAATTTCATCTGGTTGATTTTAGTAGGCCTATCATTTGGTACAAGAATGTGGAGACTTACCACCCCAAAACATGTCATATTCGATGAAGTGCATTTTGGCCAGTTTACAAACTTCTTCATGCAGAATAAATTCTTCTTTGACTTTCATCCCCCATTAGGAAAGCTCATGTTTGCACTAACAGCTTATTTTTCTGGATATGACGGACAATTTGCATTTGCTGACATTGGTCAAGATCTTGGGGAATATGAGCAGCTTGTGTGGAATTTACGTTTTGTCTCTGCTCTTCTTGGTAGTCTTGTTGTACCTATTGTTTATGAGATAATCATTGACCTGGGCTGTTCTCACTGGGCTGCTGCTTTGGGAGGTTTCTTAGCAACATTTGACAACATGCTTATTGTGCACAGTAGACTTGTCATGCTGGATGGCCCTCTACTATTTTTCACAACAGCATCATTACTGTGTTATCTTAAATTTCACAAAGAATCCAAAAGGCCATTCACCCCAAAGTGGTGTATGTGGTTAGGGCTTACTGGCGTTGCATTATTGGGTGCTTACAGCACCAAATACACAGGCATCTTTACCTTCTTTACTGTTGGATTTTTGACTGGGCGAGACCTGTGGAAACTCATTGGAAATCACTCACTTCCATTGAGTGGGCCACACGATGACATGATGTCCAGTGCTTTCCAAGCAAGTCTGGAGGGAGGATTGGCTAAAGTTACCCTTGGACAAGCAAATGATGTGGCTTATGGATCTCAAGTCACACTAAGAAACACATTTGGAAAGCAATGTTGGTTGCATTCTCACGAACACACCTACCCTGTTAAGTATCCTGATGGACGTGGTAGCTCGGCACAACAGCAGGTCACGTGCTACAGCTTCAAGGATGTTAATAACTGGTGGATCATTAAAGACCCTAGCAGAGAATCTCTTGCAATCGATTATCCACCGAGACCTGTGCATAATGGTGATATCATTCAGATTGTCCATGGGGTAACTGGTAGAGCCTTAAACAGCCACGATGTAGCTGCTCCGCTAAACCCAGCCAACCAGGAGGTGTCCTGTTATATTGACTACAACATTTCTATGGCAGCCCAGAACTTGTGGAAAGTGGATATTTTAAACCCTGACGGAAGCAATATCTGGAAGACGATTCATTCTCAAGTCAGGTTAATTCACGTGAACACGTCACAGGCCATCAAGATATCTGGAATGTCGTTACCCGAGTGGGGTTTTAATCAGCTCGAAGTATGTACAGACAAGTCGATCAAACAAACAAACACCATCTGGAATGTTGAAGAACACCAGCAGAATATAACTTACCCCGAGGGACACGTTGCAGAAGATGAAGTTAATAAAACAGAAGTCCAAGAACTCGCCTCTAAACCCATGCCTTTCTTAACCAAGTTCTGGGAGCTACAGCTGAAGATGTTGGAATCCAAAAAAGAACTTACAAATGAGCACACGTTTGGTTCTCGTCCTTCGTGGTGGCCTTTAATGAGACGAGGGGTTGCGTTCTGGATTGCAAAAGACTCAAATGCCCAGATCTTTTGCATTGGAAATCCTTTTGTTTGGTGGGCGACAACCCTTTCGATTCCAGTCTATTTCGGACTTTTAGTGTTATACTTATTAAGGAGGAGACGGAAAGTACACGATTTATCCGATGCTTCCTGGAATCAGTTTGTGTTTGTTGGAGAGGCCGTGGTATTAGGTTATTTACTCCATTTCATCACGTTTTTTCCCATGGAGAGGACGCTATTTATCCATCATTATCTGCCCGCGTTGTTCTTTAAAATTGTGCTGTTACCTGTTCTGATGGAGCATGTTCATCGAAACGTCCTCAAACTTAAAGCATTGCAGTGGATGTTGTACGCCTGTTGTGCCTTGTTCATTGTTATCGTCCTTTGGGGATTTCATTTCTTCAGCCCATTCACATACGGCAGTGTGGCTCTCTCATCGATGGAAGTTAATCAACGGAAATGGCTTAACACATGGGGAATGCTCTCTCACCCGAACACGTGA

Transcript

chr2Alt.g2860.t2

TAGATTTATGCAAACATTTCTAAAAAACAACTAGTTTTCCATAGCAATCGGTTTAAAACAATGTCGGGTGAGTTGGCAGGATCAGATGACGTCGACGCAAAGTATAATCCTCCAGATGAGAAACCTAAATCAAGCAGAACTGCAAATGGTCTGGCGCAGGAAATACATTTGCAGAAAGTGGAAAAAAGATACTCATACCAACAGCCAAGAAGCAGTGATATTCCACCTCTCACCATGAATGTGGAGCTGAATTTCATCTGGTTGATTTTAGTAGGCCTATCATTTGGTACAAGAATGTGGAGACTTACCACCCCAAAACATGTCATATTCGATGAAGTGCATTTTGGCCAGTTTACAAACTTCTTCATGCAGAATAAATTCTTCTTTGACTTTCATCCCCCATTAGGAAAGCTCATGTTTGCACTAACAGCTTATTTTTCTGGATATGACGGACAATTTGCATTTGCTGACATTGGTCAAGATCTTGGGGAATATGAGCAGCTTGTGTGGAATTTACGTTTTGTCTCTGCTCTTCTTGGTAGTCTTGTTGTACCTATTGTTTATGAGATAATCATTGACCTGGGCTGTTCTCACTGGGCTGCTGCTTTGGGAGGTTTCTTAGCAACATTTGACAACATGCTTATTGTGCACAGTAGACTTGTCATGCTGGATGGCCCTCTACTATTTTTCACAACAGCATCATTACTGTGTTATCTTAAATTTCACAAAGAATCCAAAAGGCCATTCACCCCAAAGTGGTGTATGTGGTTAGGGCTTACTGGCGTTGCATTATTGGGTGCTTACAGCACCAAATACACAGGCATCTTTACCTTCTTTACTGTTGGATTTTTGACTGGGCGAGACCTGTGGAAACTCATTGGAAATCACTCACTTCCATTGAGTGGGCCACACGATGACATGATGTCCAGTGCTTTCCAAGCAAGTCTGGAGGGAGGATTGGCTAAAGTTACCCTTGGACAAGCAAATGATGTGGCTTATGGATCTCAAGTCACACTAAGAAACACATTTGGAAAGCAATGTTGGTTGCATTCTCACGAACACACCTACCCTGTTAAGTATCCTGATGGACGTGGTAGCTCGGCACAACAGCAGGTCACGTGCTACAGCTTCAAGGATGTTAATAACTGGTGGATCATTAAAGACCCTAGCAGAGAATCTCTTGCAATCGATTATCCACCGAGACCTGTGCATAATGGTGATATCATTCAGATTGTCCATGGGGTAACTGGTAGAGCCTTAAACAGCCACGATGTAGCTGCTCCGCTAAACCCAGCCAACCAGGAGGTGTCCTGTTATATTGACTACAACATTTCTATGGCAGCCCAGAACTTGTGGAAAGTGGATATTTTAAACCCTGACGGAAGCAATATCTGGAAGACGATTCATTCTCAAGTCAGGTTAATTCACGTGAACACGTCACAGGCCATCAAGATATCTGGAATGTCGTTACCCGAGTGGGGTTTTAATCAGCTCGAAGTATGTACAGACAAGTCGATCAAACAAACAAACACCATCTGGAATGTTGAAGAACACCAGCAGAATATAACTTACCCCGAGGGACACGTTGCAGAAGATGAAGTTAATAAAACAGAAGTCCAAGAACTCGCCTCTAAACCCATGCCTTTCTTAACCAAGTTCTGGGAGCTACAGCTGAAGATGTTGGAATCCAAAAAAGAACTTACAAATGAGCACACGTTTGGTTCTCGTCCTTCGTGGTGGCCTTTAATGAGACGAGGGGTTGCGTTCTGGATTGCAAAAGACTCAAATGCCCAGATCTTTTGCATTGGAAATCCTTTTGTTTGGTGGGCGACAACCCTTTCGATTCCAGTCTATTTCGGACTTTTAGTGTTATACTTATTAAGGAGGAGACGGAAAGTACACGATTTATCCGATGCTTCCTGGAATCAGTTTGTGTTTGTTGGAGAGGCCGTGGTATTAGGTTATTTACTCCATTTCATCACGTTTTTTCCCATGGAGAGGACGCTATTTATCCATCATTATCTGCCCGCGTTGTTCTTTAAAATTGTGCTGTTACCTGTTCTGATGGAGCATGTTCATCGAAACGTCCTCAAACTTAAAGCATTGCAGTGGATGTTGTACGCCTGTTGTGCCTTGTTCATTGTTATCGTCCTTTGGGGATTTCATTTCTTCAGCCCATTCACATACGGCAGTGTGGCTCTCTCATCGATGGAAGTTAATCAACGGAAATGGCTTAACACATGGGGAATGCTCTCTCACCCGAACACGTGACACGACTCGTATCAGCCTTCCGTTGAAAATTCGGGAAATCGTAGATAACAGTGGGATGACAGCGCCGTGACCAACAAGAAAAGCGCCAACATTGACTTATGTGGGAATCTTTAACGAGCTTGAAAGCGGTCTTGGAAATTTTTTTAAAATTCTATCTCAAGTTACTCGTTGGTTAATCAAACAAAGCAACATTTAATCAGAACAAAATCTTTTTTTTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1QF89	Protein O-mannosyl-transferase 1 OS=Danio rerio OX=7955 GN=pomt1 PE=1 SV=1
Q8R2R1	Protein O-mannosyl-transferase 1 OS=Mus musculus OX=10090 GN=Pomt1 PE=1 SV=1
Q99PR0	Protein O-mannosyl-transferase 1 OS=Rattus norvegicus OX=10116 GN=Pomt1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16192 all species →	PMT_4TMC	C-terminal four TMM region of protein-O-mannosyltransferase	Family	Interproscan
PF02366 all species →	PMT	Dolichyl-phosphate-mannose-protein mannosyltransferase	Family	Interproscan
PF02815 all species →	MIR	MIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016093 all species →	Domain	MIR motif	Interproscan
IPR036300 all species →	Homologous_superfamily	Mir domain superfamily	Interproscan
IPR032421 all species →	Domain	Protein O-mannosyl-transferase, C-terminal four TM domain	Interproscan
IPR003342 all species →	Domain	Glycosyl transferase family 39/83	Interproscan
IPR027005 all species →	Family	Glycosyltransferase 39-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10050 all species →	DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0006493 all species →	Biological Process	protein O-linked glycosylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004169 all species →	Molecular Function	dolichyl-phosphate-mannose-protein mannosyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00728	POMT, pmt; dolichyl-phosphate-mannose-protein mannosyltransferase	EC:2.4.1.109	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2860.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.