Detailed information of g2861.t1 in Acropora digitifera

Genomic Location: chr2Alt:5370623...5373526
NR annotation: XP_029198524.2, DNA topoisomerase 3-beta-1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O95985DNA topoisomerase 3-beta-1 OS=Homo sapiens OX=9606 GN=TOP3B PE=1 SV=1
Q9Z321DNA topoisomerase 3-beta-1 OS=Mus musculus OX=10090 GN=Top3b PE=1 SV=1
O96651DNA topoisomerase 3-beta OS=Drosophila melanogaster OX=7227 GN=Top3beta PE=2 SV=2
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01131
all species →		Topoisom_bacDNA topoisomeraseFamilyInterproscan
PF01751
all species →		ToprimToprim domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013497
all species →		DomainDNA topoisomerase, type IA, centralInterproscan
IPR013824
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 1Interproscan
IPR000380
all species →		FamilyDNA topoisomerase, type IAInterproscan
IPR013825
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 2Interproscan
IPR003601
all species →		DomainDNA topoisomerase, type IA, domain 2Interproscan
IPR003602
all species →		DomainDNA topoisomerase, type IA, DNA-binding domainInterproscan
IPR006171
all species →		DomainTOPRIM domainInterproscan
IPR034144
all species →		DomainDNA topoisomerase 3-like, TOPRIM domainInterproscan
IPR023405
all species →		Homologous_superfamilyDNA topoisomerase, type IA, core domainInterproscan
IPR013826
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 3Interproscan
IPR023406
all species →		Active_siteDNA topoisomerase, type IA, active siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11390
all species →		PROKARYOTIC DNA TOPOISOMERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003916
all species →		Molecular FunctionDNA topoisomerase activityInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan
GO:0003917
all species →		Molecular FunctionDNA topoisomerase type I (single strand cut, ATP-independent) activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03165TOP3; DNA topoisomerase IIIEC:5.6.2.1
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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