Detailed information of g28686.t1.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_015749060.1, PREDICTED: collagen alpha-1(IV) chain-like [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P02463Collagen alpha-1(IV) chain OS=Mus musculus OX=10090 GN=Col4a1 PE=1 SV=4
Q7SIB2Collagen alpha-1(IV) chain OS=Bos taurus OX=9913 GN=COL4A1 PE=1 SV=2
P02462Collagen alpha-1(IV) chain OS=Homo sapiens OX=9606 GN=COL4A1 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01413C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001442DomainCollagen IV, non-collagenousInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR036954Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan
IPR050938FamilyCollagen and Collagen-like Structural ProteinsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37456SI:CH211-266K2.1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581Cellular Componentcollagen trimerInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06237COL4A; collagen type IV alpha-Glycosaminoglycan binding proteinsko00536deepkoala

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