Gene detail

Detailed information of g28692.t1 in Montipora capitata

Genomic Location: xfSc0000223:27436...48098
NR annotation: XP_044169062.1, cleavage and polyadenylation specificity factor subunit 2-like [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g28692.t1

atgggtgcattaccttatcttgtgggcaagtgtggtctgcattgtcctatttatgccactattcctgtctacaagatgggccagatgttcatgtatgacttatatcagtctcatcaaaactatgaagactttgaagttttcagtctggatgatgtagatgctgcttttgataaaatcattcagttaaaatactcgcaaaatgtcagcttgaaaggaaaaggtcatggtctgatgatcaccccttatgctgctggccacatgattggtggcactatgtggaaaattgtgaaagatggagaggaagatattatttatgctgtggactacaatcacaagaaagaaaggcatttgaatggagcagttttggaaacacttagcaggccatctctcctgataacagacagctttaatgccataaacgttcaggcgaggagaagagaaagggatactcaacttatgacggaaatgttaaacacaactaggagagacggaaatgttctaatagttgttgatacagccggaagagttttggagttatcgcagttattggatcagttatggcgtaatactgattccgggttatcagcatattctcttgcaatgctcaacaatgtcagttataatgttgtggaatttgctaagtcacaggtggaatggatgagtgacaaagttatgaaatcttttgaaattgggagaatgaacccttatcagttcagatattgttccctgtgtcatagcttggctgatcttgccagaattcctgatccgaaggttgtattagcatcagttgcagatctgacatgtggtttctccagagaactctttatcaagtgggcagagggacccaaaaacactgttgtgtttacctgccgaccatcccctggaacacttgctcgatccttgattgacaatttacaacagaagacagttgacattgaggtaaaaacaagagtaaaactggaaggagaagagctggagagatacctggaagaagaaaaggaaaaagagaagaatcggcaagttaatgaagcagctgaaaggagtcatttgactgtagaagagagtgacagtgacagtgatgaagatttggagggaggagtcaggcacgatcttatgatggctgatgaaaagggtggtcgcaaaagcagctttttcaaacaggccagatcctatcccatgttcccttgtcatgaagaaaagatcaaatgggatgattatggagaattcatcagaccagaagattttatgatcagggagttggcagcagccgaggaagaaaaagccaaagtggagcaaagtaaaaaggaatcttcggacacagaagctatgacggcacatggagaaatgtcaaaaattcctacaaagtgtatggtggagaaaaagcaactaaacatcagatgttcgttgttgtatattgatttcgaaggacgctcagacggcgagtcgatcaagaggattctttcactcgttaatccaagaaacctcattctggtgcatggtgtcgaggaagccacagaccatcttgctgaatactgccggcaaaacactagtatacaagttaatcaagtgtttacaccgcgatgtggcgacacggtggattccactggagaaagatatatttatcaggtcaagctgcgtgatgcgctggtgagctccttgcagttttctcgcgcgcgtgacgcggaactcgcgtgggttgacgggcagctgcatatgaatgcctctgagtcccacgtggggctggtcctggaagatggagagttgcgagacgacgaggagggtcatgagaaaatggaaacggatcagagtaatcggagtggcaaggaggaaccaatggacacagtacccgtattggaacagcttcagttggcacagatcactgggcacacttcagtttatataaacgagccgcgtctgtcggattttaagcaggtcttaaacaaagctggaattcaagcggaatttgctggtggtgttttgatctgtaacaatgttgttgccgtcagaaggaacgagactggccgagtaggcctggaaggagccgtgtgtgatgattactacaagatccgtgaactgttgtacgagcaatacgccgttgtgtga

Transcript

g28692.t1

ATGGGTGCATTACCTTATCTTGTGGGCAAGTGTGGTCTGCATTGTCCTATTTATGCCACTATTCCTGTCTACAAGATGGGCCAGATGTTCATGTATGACTTATATCAGTCTCATCAAAACTATGAAGACTTTGAAGTTTTCAGTCTGGATGATGTAGATGCTGCTTTTGATAAAATCATTCAGTTAAAATACTCGCAAAATGTCAGCTTGAAAGGAAAAGGTCATGGTCTGATGATCACCCCTTATGCTGCTGGCCACATGATTGGTGGCACTATGTGGAAAATTGTGAAAGATGGAGAGGAAGATATTATTTATGCTGTGGACTACAATCACAAGAAAGAAAGgcatTTGAATGGAGCAGTTTTGGAAACACTTAGCAGGCCATCTCTCCTGATAACAGACAGCTTTAATGCCATAAACGTTCAGGCGAGGAGAAGAGAAAGGGATACTCAACTTATGACGGAAATGTTAAACACAACTAGGAGAGACGGAAATGTTCTAATAGTTGTTGATACAGCCGGAAGAGTTTTGGAGTTATCGCAGTTATTGGATCAGTTATGGCGTAATACTGATTCCGGGTTATCAGCATATTCTCTTGCAATGCTCAACAATGTCAGTTATAATGTTGTGGAATTTGCTAAGTCACAGGTGGAATGGATGAGTGACAAAGTTATGAAATCTTTTGAAATTGGGAGAATGAACCCTTATCAGTTCAGATATTGTTCCCTGTGTCATAGCTTGGCTGATCTTGCCAGAATTCCTGATCCGAAGGTTGTATTAGCATCAGTTGCAGATCTGACATGTGGTTTCTCCAGAGAACTCTTTATCAAGTGGGCAGAGGGACCCAAAAACACTGTTGTGTTTACCTGCCGACCATCCCCTGGAACACTTGCTCGATCCTTGATTGACAATTTACAACAGAAGACAGTTGACATTgagGTAAAAACAAGAGTAAAACTGGAAGGAGAAGAGCTGGAGAGATACctggaagaagaaaaggaaaaagagaagaatCGGCAAGTTAATGAAGCAGCTGAAAGGAGTCATTTGACTGTAGAAGagagtgacagtgacagtgatgAAGATTTGGAGGGAGGAGTCAGGCACGATCTTATGATGGCTGATGAAAAGGGTGGTCGCAAAAGCAGCTTTTTCAAACAGGCCAGATCCTATCCCatgttcccttgtcatgaaGAAAAGATCAAATGGGATGATTATGGAGAATTCATCAGACCAGAAGATTTTATGATCAGGGAGTTGGCAGCAGCCGAGGAAGAAAAAGCCAAAGTGGAGCAAAGTAAAAAGGAATCTTCGGACACAGAAGCTATGACGGCACATGgagaaATGTCAAAAATTCCTACAAAGTGTATGGTGGAGAAAAAGCAACTAAACATCAGATGTTCGTTGTTGTATATTGATTTCGAAGGACGCTCAGACGGCGAGTCGATCAAGAGGATTCTTTCACTCGTTAATCCAAGAAACCTCattcTGGTGCATGGTGTCGAGGAAGCCACAGACCATCTTGCTGAATACTGCCGGCAAAACACTAGTATACAAGTTAATCAAGTGTTTACACCGCGATGTGGCGACACGGTGGATTCCACTGGAGAAAGATATATTTATCAGGTCAAGCTGCGTGATGCGCTGGTGAGCTCCTTGCAGTTTTCTCGCGCGCGTGACGCGGAACTCGCGTGGGTTGACGGGCAGCTGCATATGAATGCCTCTGAGTCCCACGTGGGGCTGGTCCTGGAAGATGGAGAGTTGCGAGACGACGAGGAGGGTCATGAGAAAATGGAAACGGATCAGAGTAATCGGAGTGGCAAGGAGGAACCAATGGACACAGTACCCGTATTGGAACAGCTTCAGTTGGCACAGATCACTGGGCACACTTCAGTTTATATAAACGAGCCGCGTCTGTCGGATTTTAAGCAGGTCTTAAACAAAGCTGGAATTCAAGCGGAATTTGCTGGTGGTGTTTTGATCTGTAACAATGTTGTTGCCGTCAGAAGGAACGAGACTGGCCGAGTAGGCCTGGAAGGAGCCGTGTGTGATGATTACTACAAGATCCGTGAACTGTTGTACGAGCAATACGCCGTTGTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q10568	Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus OX=9913 GN=CPSF2 PE=1 SV=1
Q9P2I0	Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens OX=9606 GN=CPSF2 PE=1 SV=2
O35218	Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus OX=10090 GN=Cpsf2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004914 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10996 all species →	Beta-Casp	Beta-Casp domain	Domain	Interproscan
PF07521 all species →	RMMBL	Zn-dependent metallo-hydrolase RNA specificity domain	Motif	Interproscan
PF16661 all species →	Lactamase_B_6	Metallo-beta-lactamase superfamily domain	Domain	Interproscan
PF13299 all species →	CPSF100_C	Cleavage and polyadenylation factor 2 C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035639 all species →	Domain	CPSF2, metallo-hydrolase domain	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR022712 all species →	Domain	Beta-Casp domain	Interproscan
IPR011108 all species →	Domain	Zn-dependent metallo-hydrolase, RNA specificity domain	Interproscan
IPR027075 all species →	Family	Cleavage and polyadenylation specificity factor subunit 2	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR025069 all species →	Domain	Cleavage and polyadenylation specificity factor 2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45922 all species →	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006398 all species →	Biological Process	mRNA 3'-end processing by stem-loop binding and cleavage	Interproscan
GO:0098789 all species →	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14402	CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.