Gene detail

Detailed information of g28745.t1 in Acropora digitifera

Genomic Location: chr13Alt:24223727...24238194
NR annotation: XP_029185163.2, dynein intermediate chain 3, ciliary-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr13Alt.g28745.t1

GGAACTTGGGCACTTTCGAGGTTAATAAGGGTATCCATCACGACCCCATGAGCAGAAGCCACTCCTGCATACATGCAACCACCAACAGGTACCATTGTTTTGACTTTACATAATAAATTCAAAATGGAGATTGTGTATGTGTACACAAAGAAGAGGAGTGAGTTTGGACGACAGTGTAATTTCTCAGATCGTCAGGCCGAACTACATGTAGACATTGCTCCAGATGAGAAACTACTTCAGGATTATATTGAGAAAAATCCATGTGACACAGGAATCCAGTGTGTACAAGAGATGTCTGAGCATGAGGTCAATACAGAACGTTTTGAAACAGAGAGTCGTGGTATTAACCATGTTGAGGGAGGCTGGCCAAAGGATGTCAATCCTGCTGAAGTTGAACAGACTATCAGATACAGGAAAAAGGTTGAAAAGGATGAGATATACATGAATACCATACAGCAACTTGGAAATACAATGGAACATTGCATCAAGCAAAACAATGCAATTGATATATATGAGGAATATTTTGCGGATATCGATGTTGACACTTCAGGTGACCCACCATCTGCCAAAACCATCAATGTATTCAGAGACCCCCATGAGTTAAAGAGGACAGCCACTAGCCTATCATGGTACCCAGAGAGTACCAGAAAGCTTGCTGTGGCTTATTCCATTTTGGAGTTTCAAAAATTTGCTGGGGAAACCTCAATGGACTCCTACATTTGGGACATTGAAAATCCCAACAAACCAGAACTTGCTCTGAAGCCAGTGTCACCATTGGTTTGTTTGGAATACAATCCAAAGGATCCTCACATTCTTGTTGGTGGATGCTACAATGGACAGCTTGGTTTTTGGGATACTCGCAAAGGATCACATCCAGTGGAAATGACAGCTATCGAGTTCAGTCACAGAGACCCCATCTATAAGACTATATTTCTTCAGTCCAAGACAGGTACTGAATGCTTCTCTACCAGCACTGATGGACAGGTCCTTTGGTGGGATATTCGCAAGTTAGGGGAGCCCACAGAATCACTACTGCTGTGCCCAAACATAAAGAAAGATCCCCGCCCTCAAGGAGGGGTTTCACTGGAGTTTGAACCAACTATGCCCACTAAGTTTATGGTTGGAACCGAGCAAGGTTCAGTGTTGTCGTGCAACCGTAAGGCAAAATCCCCATCAGAGAAGATTGTCTGCTCATTTTCTCAGCATTATGGGCCTGTGTATGCTGTACAGCGAAATCCATTCTTTCCCAAGAACTTCTTGACCATTGGAGACTGGACAGCAAGGATTTGGTCAGAGGATCTTAGGGAATCTTCCATCATGTGGACAAAGCAACACATGTCATACATGACGGATGGTTGTTGGAGTCCCGTGCGACCTGCAGTCTTCTTTACCTCTAAGATGGACGGCACATTAGATGTGTGGGATTACCTCTTTAAGCAGAATGACCCTACGCTCAGCATTCAGGTCTGTGACGAATCACTCAATTCACTGCGTGTCCAAGAGCAGGGCCGGTTGGTGGCCTGTGGCTCTCACACTGGCACTGTTACCTTGTTGGAATTGTCTGATGGTCTTTGTAACATGCAGAGGAATGAAAAGGCATCAGTGACTGCGATGTTTGAAAGAGAGACTAAGAGGGAGAAAATCCTAGAAGCAAGGCACAGAGAAATGCGTTTGAAAGAACGATCAAAGAGTTCACAAGACAAAGAAGAAACCCACGAACAGGCTGCTGAGGAAGAAGAAGGAGAAGATTTGGTTATCAAAGCAGAGGCAGAGTTCTTCAAGATAATTGAAGCTGAGAAGAAGGCTTTGGAAGATGCTGAGAACAAGAGGAATGTGGCTCTAGCAGAGATGAAACAAGCCATAGCACAAGAAGACGTCACTCATAACGATTACAAAGAAGACGGAGAAGAAAAGGACAAAATGCAGGACCAGGTCCAGCAGCCAGCTGAAGAAAGTTCAGTTAAAACTGAGGGAACTGAAGATCCATTAAAATCTTAGATCTCTGAACAGAACTTTGGCTTGTGTAAATTGTTCAAAGCTTTCCTTTCAATTACAGCTTTTGGATACTTGCTCCATAGCTGTGGCTAACAGGCAAAATATAAGCTGAAACCAAATAAATTTCACGAGTTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16960	Dynein intermediate chain 3, ciliary OS=Heliocidaris crassispina OX=1043166 PE=2 SV=1
Q9GZS0	Dynein axonemal intermediate chain 2 OS=Homo sapiens OX=9606 GN=DNAI2 PE=1 SV=2
Q66HC9	Dynein axonemal intermediate chain 2 OS=Rattus norvegicus OX=10116 GN=Dnai2 PE=2 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was detected for g28745.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR050687 all species →	Family	Dynein Intermediate Chain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442 all species →	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0036157 all species →	Cellular Component	outer dynein arm	Interproscan
GO:0036158 all species →	Biological Process	outer dynein arm assembly	Interproscan
GO:0045503 all species →	Molecular Function	dynein light chain binding	Interproscan
GO:0045504 all species →	Molecular Function	dynein heavy chain binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11143	DNAI2; dynein axonemal intermediate chain 2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.