Detailed information of g289.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: AFI99120.1, PDZ-domain protein inturned [Clytia hemisphaerica]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
F6U5F9Protein inturned OS=Xenopus tropicalis OX=8364 GN=intu PE=3 SV=1
Q059U7Protein inturned OS=Mus musculus OX=10090 GN=Intu PE=1 SV=1
Q2I0E5Protein inturned OS=Xenopus laevis OX=8355 GN=intu PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00590TP_methylaseTetrapyrrole (Corrin/Porphyrin) MethylasesDomainInterproscan
PF01890CbiG_CCobalamin synthesis G C-terminusDomainInterproscan
PF02687FtsXFtsX-like permease familyFamilyInterproscan
PF07244POTRASurface antigen variable number repeatDomainInterproscan
PF01103Omp85Omp85 superfamily domainDomainInterproscan
PF00595PDZPDZ domainDomainInterproscan
PF19033Intu_longin_3Intu longin-like domain 3DomainInterproscan
PF19032Intu_longin_2Intu longin-like domain 2DomainInterproscan
PF19031Intu_longin_1First Longin domain of INTU, CCZ1 and HPS4DomainInterproscan
PF00171AldedhAldehyde dehydrogenase familyFamilyInterproscan
PF21249GyrB_hookGyrB, hookDomainInterproscan
PF01751ToprimToprim domainFamilyInterproscan
PF00204DNA_gyraseBDNA gyrase BDomainInterproscan
PF02518HATPase_cHistidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan
PF00986DNA_gyraseB_CDNA gyrase B subunit, carboxyl terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050161FamilySiroheme and cobalamin biosynthesis enzymesInterproscan
IPR000878DomainTetrapyrrole methylaseInterproscan
IPR035996Homologous_superfamilyTetrapyrrole methylase superfamilyInterproscan
IPR036518Homologous_superfamilyCobE/GbiG C-terminal domain superfamilyInterproscan
IPR014777Homologous_superfamilyTetrapyrrole methylase, subdomain 1Interproscan
IPR006364DomainPrecorrin-2 C(20)-methyltransferase domainInterproscan
IPR014776Homologous_superfamilyTetrapyrrole methylase, subdomain 2Interproscan
IPR002750DomainCobE/GbiG C-terminal domainInterproscan
IPR003043Conserved_siteUroporphiryn-III C-methyltransferase, conserved siteInterproscan
IPR006362DomainCobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferaseInterproscan
IPR012382FamilyPrecorrin-2 C(20)-methyltransferaseInterproscan
IPR028994Homologous_superfamilyIntegrin alpha, N-terminalInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR051447FamilyLipoprotein-releasing system transmembrane proteinInterproscan
IPR003838DomainABC3 transporter permease protein domainInterproscan
IPR010827DomainPOTRA domain, BamA/TamA-likeInterproscan
IPR023707FamilyOuter membrane protein assembly factor BamAInterproscan
IPR000184DomainBacterial surface antigen (D15)Interproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR039151FamilyProtein inturnedInterproscan
IPR001478DomainPDZ domainInterproscan
IPR043989DomainCCZ1/INTU/HPS4, third Longin domainInterproscan
IPR043988DomainCCZ1/INTU, second Longin domainInterproscan
IPR043987DomainCCZ1/INTU/HSP4, first Longin domainInterproscan
IPR029510Conserved_siteAldehyde dehydrogenase, glutamic acid active siteInterproscan
IPR016161Homologous_superfamilyAldehyde/histidinol dehydrogenaseInterproscan
IPR016162Homologous_superfamilyAldehyde dehydrogenase, N-terminalInterproscan
IPR015590DomainAldehyde dehydrogenase domainInterproscan
IPR016163Homologous_superfamilyAldehyde dehydrogenase, C-terminalInterproscan
IPR011557FamilyDNA gyrase, subunit BInterproscan
IPR034160DomainDNA gyrase subunit B, TOPRIM domainInterproscan
IPR049353DomainDNA gyrase subunit B, hookInterproscan
IPR006171DomainTOPRIM domainInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR000565FamilyDNA topoisomerase, type IIA, subunit BInterproscan
IPR013760Homologous_superfamilyDNA topoisomerase, type IIA-like domain superfamilyInterproscan
IPR036890Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan
IPR013506DomainDNA topoisomerase, type IIA, subunit B, domain 2Interproscan
IPR001241FamilyDNA topoisomerase, type IIAInterproscan
IPR003594DomainHistidine kinase/HSP90-like ATPaseInterproscan
IPR018522Conserved_siteDNA topoisomerase, type IIA, conserved siteInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR002288DomainDNA gyrase B subunit, C-terminalInterproscan
IPR013759Homologous_superfamilyDNA topoisomerase, type IIA, subunit B, C-terminalInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR45790SIROHEME SYNTHASE-RELATEDInterproscan
PTHR46580SENSOR KINASE-RELATEDInterproscan
PTHR30489LIPOPROTEIN-RELEASING SYSTEM TRANSMEMBRANE PROTEIN LOLEInterproscan
PTHR21082PROTEIN INTURNEDInterproscan
PTHR11699ALDEHYDE DEHYDROGENASE-RELATEDInterproscan
PTHR45866DNA GYRASE/TOPOISOMERASE SUBUNIT BInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004851Molecular Functionuroporphyrin-III C-methyltransferase activityInterproscan
GO:0019354Biological Processsiroheme biosynthetic processInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0009236Biological Processcobalamin biosynthetic processInterproscan
GO:0008757Molecular FunctionS-adenosylmethionine-dependent methyltransferase activityInterproscan
GO:0046026Molecular Functionprecorrin-4 C11-methyltransferase activityInterproscan
GO:0030788Molecular Functionprecorrin-2 C20-methyltransferase activityInterproscan
GO:0044874Biological Processlipoprotein localization to outer membraneInterproscan
GO:0098797Cellular Componentplasma membrane protein complexInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0019867Cellular Componentouter membraneInterproscan
GO:0071709Biological Processmembrane assemblyInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0001736Biological Processestablishment of planar polarityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005929Cellular ComponentciliumInterproscan
GO:0007399Biological Processnervous system developmentInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptorInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003918Molecular FunctionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005694Cellular ComponentchromosomeInterproscan
GO:0006265Biological ProcessDNA topological changeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23463tgnC; (Z)-2-((N-methylformamido)methylene)-5-hydroxybutyrolactone dehydrogenaseEC:1.2.1.-
Domain-containing proteins not elsewhere classifiedko04990deepkoala
DNA repair and recombination proteinsko03400deepkoala
Enzymes with EC numbers-deepkoala

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