Gene detail

Detailed information of g28994.t1 in Montipora capitata

Genomic Location: xfSc0000318:28330...35289
NR annotation: XP_029193082.2, activating transcription factor 7-interacting protein 1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g28994.t1

atggatcacatagaaggatcagtaaaaagacggaaacttgaagacggagtcagctctaccactgagaaccacgtgacaaatggacatccgggaagcggaggaagcgttgccaccccttcccgagcccagtcccatctgcagtttaaccattccatgtttgaacggcttcgcaaaattacaaaagattgtcgaaagaacttccagccgacacccaaactgaaggggagcaaattaccgcttgccaaaggaaaaggtaatgaagacagctcggaggaaaacaagtcgactgcagcatctgccggtggatcagattttgtcatatcctcggctggctcatcgccggcacattctccacagccgatggatttcgaaattttgtccactcctccgcggccaagtagaccaaagccagcggatgtagaagtgttaagcacgtccccgcgaactagtaaacttgaaccaaagaattttgaagtcctagccacacctctgcggacgagtacagcaaaggtaactattgagaatggggccgttaattttgagctcgcgcacaactcgactgaggatggcgataaaatattgaacagaaacaaggaacgacttgaagagagttcttcaaagagaacgttgccgaatggtgtctatacagacactagaattttggagcagaacactacttctgtggaagttctcgaggaaggtgatcaaaccaatttgggatcgggttactcttcaaagacgggcgatgcagtcaatgggaaggtcaactcgctggcaacaaggaaagacgtgtctcaagtttctgtccctaatgcgatacccaggacaaattctgtcgagggaactggtgggttaaacctcaattcagaagacttccgagaaatgatcaagaaaatgattgaagagagaatgaagcaaatcgagcgttcgatgggtcgcgaaaatgcagaaaaattaactctgctcgagcaagaaaatactgctctaagagaccacgcgaacaagttagaggcatctctgaaaaaacttaccgagagtgaagcaagaaaggaaagggtaacgcgttcagttcagactcaagatattaacctgtatagcgatctgtgtccaaagacaagtgggccagctcctctccaaatcactgtggcagttactcgaccctcttccatgggactcgtccttgacactacacctacaccacgacttacctccactgtagcacctctaccaggtcatactgtgccctcacgcctcgaaaatactccagttggctatcaacacgcaggtcaaagaccgcagttatcgcaaaaggagcctctgcgaccacgaattccatctatgcccagtatgtcacctcgcacacaacaagcaggcggtaattacgctcccaattatgatcctggaccaacaggaagatcggtccccggtcagcttacagggctgcgcggtgcatcaccggcaaatttctcctcgcaaggcgtccctcggattaataatgcactcactgctcaacctgttgtgaggatgcaaggacctgttgttagtccaggggatcctcggagtaacacaactccttctagccggccgttacccactgtgacagtacaccctcagactcagactccacccagcgtttcttctatgagggttcagcaagagccctctgcgtacggataccctgctcaaaacgtctttaataatggacaaccgcgaccgagattcactgtaaaccctcagatgagactgcaaagaccaccccatcctcagagtgtgcctcaacagatttcacctggaccaaggactccagtatttcagcgatctcctacgcaagcagcgtcatcaacacagcgcatcatgcaacagccgatacgtatggagcaacagaaaactcaacttcctcgcccctcggcgccgataagagcgaatcctccagtgcagatacaaactggaattcaacgacgacctcagcagcacaatgcagtgacccattaccagcagctacccacaccccagcggcaaggaactcccactcaaccttcagctaactacgggacagcagcaataagaggccctcagcccacacctgcagggattccacagcagttacctggaacacccatagtacagactaaggaagctcctccgaaacccaccgtgtccattgcagtggtgacgagtggcattgttttgtcgtggaacatggccttggaggacagacatgcgactattatgaactatcagttgtttgcgctgcaagatggcggcaccgtcgaaaacgcgcatcagtggaaaaaaataggggttgtcaaagcgttgcctcttcccatggcctgcacattgacccagtttttacccggaaataaatatcattttgccgtacgtgctaccgatgaaacgggaagacttggtccatttagtgacccttgcactatcactcttaaataa

Transcript

g28994.t1

ATGGATCACATAGAAGGATCAGTAAAAAGACGGAAACTTGAAGACGGAGTCAGCTCTACCACTGAGAACCACGTGACAAATGGACATCCGGGAAGCGGAGGAAGCGTTGCCACCCCTTCCCGAGCCCAGTCCCATCTGCAGTTTAACCATTCCATGTTTGAACGGCTTCGCAAAATTACAAAAGATTGTCGAAAGAACTTCCAGCCGACACCCAAACTGAAGGGGAGCAAATTACCGCTTGCCAAAGGAAAAGGTAATGAAGACAGCTCGGAGGAAAACAAGTCGACTGCAGCATCTGCCGGTGGATCAGATTTTGTCATATCCTCGGCTGGCTCATCGCCGGCACATTCTCCACAGCCGATGGATTTCGAAATTTTGTCCACTCCTCCGCGGCCAAGTAGACCAAAGCCAGCGGATGTAGAAGTGTTAAGCACGTCCCCGCGAACTAGTAAACTTGAACCAAAGAATTTTGAAGTCCTAGCCACACCTCTGCGGACGAGTACAGCAAAGGTAACTATTGAGAATGGGGCCGTTAATTTTGAGCTCGCGCACAACTCGACTGAGGATGGCGATAAAATATTGAACAGAAACAAGGAACGACTTGAAGAGAGTTCTTCAAAGAGAACGTTGCCGAATGGTGTCTATACAGACACTAGAATTTTGGAGCAGAACACTACTTCTGTGGAAGTTCTCGAGGAAGGTGATCAAACCAATTTGGGATCGGGTTACTCTTCAAAGACGGGCGATGCAGTCAATGGGAAGGTCAACTCGCTGGCAACAAGGAAAGACGTGTCTCAAGTTTCTGTCCCTAATGCGATACCCAGGACAAATTCTGTCGAGGGAACTGGTGGGTTAAACCTCAATTCAGAAGACTTCCGAGAAATGATCAAGAAAATGATTGAAGAGAGAATGAAGCAAATCGAGCGTTCGATGGGTCGCGAAAATGCAGAAAAATTAACTCTGCTCGAGCAAGAAAATACTGCTCTAAGAGACCACGCGAACAAGTTAGAGGCATCTCTGAAAAAACTTACCGAGAGTGAAGCAAGAAAGGAAAGGGTAACGCGTTCAGTTCAGACTCAAGATATTAACCTGtatAGCGATCTGTGTCCAAAGACAAGTGGGCCAGCTCCTCTCCAAATCACTGTGGCAGTTACTCGACCCTCTTCCATGGGACTCGTCCTTGACACTACACCTACACCACGACTTACCTCCACTGTAGCACCTCTACCAGGTCATACTGTGCCCTCACGCCTCGAAAATACTCCAGTTGGCTATCAACACGCAGGTCAAAGACCGCAGTTATCGCAAAAGGAGCCTCTGCGACCACGAATTCCATCTATGCCCAGTATGTCACCTCGCACACAACAAGCAGGCGGTAATTACGCTCCCAATTATGATCCTGGACCAACAGGAAGATCGGTCCCCGGTCAGCTTACAGGGCTGCGCGGTGCATCACCGGCAAATTTCTCCTCGCAAGGCGTCCCTCGGATTAATAATGCACTCACTGCTCAACCTGTTGTGAGGATGCAAGGACCTGTTGTTAGTCCAGGGGATCCTCGGAGTAACACAACTCCTTCTAGCCGGCCGTTACCCACTGTGACAGTACACCCTCAGACTCAGACTCCACCCAGCGTTTCTTCTATGAGGGTTCAGCAAGAGCCCTCTGCGTACGGATACCCTGCTCAAAACGTCTTTAATAATGGACAACCGCGACCGAGATTCACTGTAAACCCTCAGATGAGACTGCAAAGACCACCCCATCCTCAGAGTGTGCCTCAACAGATTTCACCTGGACCAAGGACTCCAGTATTTCAGCGATCTCCTACGCAAGCAGCGTCATCAACACAGCGCATCATGCAACAGCCGATACGTATGGAGCAACAGAAAACTCAACTTCCTCGCCCCTCGGCGCCGATAAGAGCGAATCCTCCAGTGCAGATACAAACTGGAATTCAACGACGACCTCAGCAGCACAATGCAGTGACCCATTACCAGCAGCTACCCACACCCCAGCGGCAAGGAACTCCCACTCAACCTTCAGCTAACTACGGGACAGCAGCAATAAGAGGCCCTCAGCCCACACCTGCAGGGATTCCACAGCAGTTACCTGGAACACCCATAGTACAGACTAAGGAAGCTCCTCCGAAACCCACCGTGTCCATTGCAGTGGTGACGAGTGGCATTGTTTTGTCGTGGAACATGGCCTTGGAGGACAGACATGCGACTATTATGAACTATCAGTTGTTTGCGCTGCAAGATGGCGGCACCGTCGAAAACGCGCATCAGTGGAAAAAAATAGGGGTTGTCAAAGCGTTGCCTCTTCCCATGGCCTGCACATTGACCCAGTTTTTACCCggaaataaatatcattttgcCGTACGTGCTACCGATGAAACGGGAAGACTTGGTCCATTTAGTGACCCTTGCACTATCACTCTTAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6VMQ6	Activating transcription factor 7-interacting protein 1 OS=Homo sapiens OX=9606 GN=ATF7IP PE=1 SV=3
Q7TT18	Activating transcription factor 7-interacting protein 1 OS=Mus musculus OX=10090 GN=Atf7ip PE=1 SV=1
Q5ZIE8	Activating transcription factor 7-interacting protein 1 OS=Gallus gallus OX=9031 GN=ATF7IP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001295 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16794 all species →	fn3_4	Fibronectin-III type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026085 all species →	Family	Activating transcription factor 7-interacting protein	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23210 all species →	ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0090309 all species →	Biological Process	obsolete positive regulation of DNA methylation-dependent heterochromatin formation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25802	ATF7IP, MCAF; activating transcription factor 7-interacting protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g28994.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

249.8Max TPM

101.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	98.60	215.98
whole organisms · low pH treatment	15	15	111.75	249.81
whole organisms · extra low pH treatment pH treatment	12	12	94.49	203.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	215.98
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	194.27
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	193.90
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	179.53
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	167.68
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	159.34
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	129.39
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	114.18
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	95.55
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	93.92
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	90.51
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	89.36
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	71.09
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	64.85
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	64.17
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	62.04
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	21.51
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	20.03
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	19.02
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	15.95
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	8.32
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	249.81
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	234.16
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	192.35
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	188.55
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	177.44
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	165.25
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	93.61
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	84.83
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	78.65
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	60.35
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	55.68
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	50.89
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	17.45
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	17.29
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	9.99
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	203.56
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	194.58
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	167.69
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	135.86
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	107.94
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	89.12
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	70.59
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	69.28
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	54.97
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	16.76
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	13.81
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	9.70

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.