Gene detail

Detailed information of g29.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBL8629784.1, aminopeptidase N [Rhodospirillaceae bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P04825	Aminopeptidase N OS=Escherichia coli (strain K12) OX=83333 GN=pepN PE=1 SV=2
Q8H0S9	Puromycin-sensitive aminopeptidase OS=Arabidopsis thaliana OX=3702 GN=MPA1 PE=2 SV=1
B7EA73	Puromycin-sensitive aminopeptidase OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0562700 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000032 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000042 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002087 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002276 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002538 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003774 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006112 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006651 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009060 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0013809 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0023329 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09439 all species →	SRPRB	Signal recognition particle receptor beta subunit	Domain	Interproscan
PF07555 all species →	NAGidase	beta-N-acetylglucosaminidase	Family	Interproscan
PF13961 all species →	DUF4219	Domain of unknown function (DUF4219)	Domain	Interproscan
PF14223 all species →	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF00310 all species →	GATase_2	Glutamine amidotransferases class-II	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01433 all species →	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan
PF11940 all species →	DUF3458	Domain of unknown function (DUF3458) Ig-like fold	Domain	Interproscan
PF17432 all species →	DUF3458_C	Domain of unknown function (DUF3458_C) ARM repeats	Repeat	Interproscan
PF17900 all species →	Peptidase_M1_N	Peptidase M1 N-terminal domain	Domain	Interproscan
PF00883 all species →	Peptidase_M17	Cytosol aminopeptidase family, catalytic domain	Domain	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF04124 all species →	Dor1	Dor1-like family	Repeat	Interproscan
PF13481 all species →	AAA_25	AAA domain	Domain	Interproscan
PF00253 all species →	Ribosomal_S14	Ribosomal protein S14p/S29e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019009 all species →	Family	Signal recognition particle receptor, beta subunit	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR024156 all species →	Family	Small GTPase superfamily, ARF type	Interproscan
IPR051822 all species →	Family	Glycosyl Hydrolase Family 84	Interproscan
IPR011496 all species →	Domain	Beta-N-acetylglucosaminidase, catalytic domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR025314 all species →	Domain	Domain of unknown function DUF4219	Interproscan
IPR017932 all species →	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR050711 all species →	Family	Electron transfer and nitrogen metabolism enzyme	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR040247 all species →	Family	Protein of unknown function DUF5524	Interproscan
IPR042097 all species →	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan
IPR012779 all species →	Family	Peptidase M1, alanyl aminopeptidase	Interproscan
IPR037144 all species →	Homologous_superfamily	Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily	Interproscan
IPR038438 all species →	Homologous_superfamily	Alanyl aminopeptidase, Ig-like domain superfamily	Interproscan
IPR014782 all species →	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan
IPR035414 all species →	Domain	Peptidase M1, alanyl aminopeptidase, Ig-like fold	Interproscan
IPR027268 all species →	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR024601 all species →	Domain	Peptidase M1, alanyl aminopeptidase, C-terminal	Interproscan
IPR045357 all species →	Domain	Aminopeptidase N-like , N-terminal domain	Interproscan
IPR011356 all species →	Family	Peptidase M17, leucine aminopeptidase/peptidase B	Interproscan
IPR000819 all species →	Domain	Peptidase M17, leucyl aminopeptidase, C-terminal	Interproscan
IPR040325 all species →	Family	RIMS-binding protein 1/2/3	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR035755 all species →	Domain	RIMS-binding protein, third SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR007255 all species →	Family	Conserved oligomeric Golgi complex subunit 8	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR051941 all species →	Family	Blood Group Antigen-Binding Lectin	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR004504 all species →	Family	DNA repair protein RadA	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR020588 all species →	Domain	DNA recombination and repair protein RecA-like, ATP-binding domain	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR001209 all species →	Family	Small ribosomal subunit protein uS14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11711 all species →	ADP RIBOSYLATION FACTOR-RELATED	Interproscan
PTHR13170 all species →	O-GLCNACASE	Interproscan
PTHR11938 all species →	FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR31097 all species →	SI:DKEY-276J7.1	Interproscan
PTHR46322 all species →	PUROMYCIN-SENSITIVE AMINOPEPTIDASE	Interproscan
PTHR14234 all species →	RIM BINDING PROTEIN-RELATED	Interproscan
PTHR31751 all species →	SI:CH211-108C17.2-RELATED-RELATED	Interproscan
PTHR21311 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8	Interproscan
PTHR45713 all species →	FTP DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR32472 all species →	DNA REPAIR PROTEIN RADA	Interproscan
PTHR19836 all species →	30S RIBOSOMAL PROTEIN S14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0009100 all species →	Biological Process	glycoprotein metabolic process	Interproscan
GO:0016231 all species →	Molecular Function	beta-N-acetylglucosaminidase activity	Interproscan
GO:0006537 all species →	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930 all species →	Molecular Function	glutamate synthase activity	Interproscan
GO:0016040 all species →	Molecular Function	glutamate synthase (NADH) activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0019676 all species →	Biological Process	ammonia assimilation cycle	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0019538 all species →	Biological Process	protein metabolic process	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0007274 all species →	Biological Process	neuromuscular synaptic transmission	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan
GO:0000725 all species →	Biological Process	recombinational repair	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02954	RP-S14, MRPS14, rpsN; small subunit ribosomal protein S14	-	Ribosome	ko03011	deepkoala
K04485	radA, sms; DNA repair protein RadA/Sms	-	DNA repair and recombination proteins	ko03400	deepkoala
K12272	SRPRB, SRP102; signal recognition particle receptor subunit beta	-	GTP-binding proteins	ko04031	deepkoala
K20295	COG8; conserved oligomeric Golgi complex subunit 8	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →