Gene detail

Detailed information of g2909.t2 in Acropora digitifera

Genomic Location: chr2Alt:6176730...6194872
NR annotation: XP_044177360.1, cadherin EGF LAG seven-pass G-type receptor 3-like isoform X5 [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2909.t2

ATGGAAAGAAAACAAATGGAGCTTCGACGAACTGTACCTGTGATATTTTTGCTTATTAACTTCGGGGTCTTCATATCGTCCGAAAAAGTGGTTATTGATGATCCACAATCCACCGTCATATGTATCTCGGGAAACACATCGTATGACGTAACATTTGTTAGGGACATCAACGCTGGTGTCTTCACGTCCTTGGGTGAGTCGAGCAGTGTGAGGAGTTGTGTTCGAAAGGCTTGTAACATGCGAGCGCCGAATGATTACCTAGTGGCTTTCTTGGTTGAAAAAAACTGTTACATGGTGCGATGTCACTCCAAAGGTCACTGCATGACGAAGCCATCAGACTCTCCAAGTCATTTCAGAATCTCTATCACTCCTTACACATGGTTCGATGCAGCTCCTGTCTTTACAAATGCCCCGAAGGTGCTCCAAGTAAAAGAAAACAACCAACGCGGTCAAATTATCACAAACATCCATGGACATGCAAGAAGCCGCTGGCATAACAATGCATCCATCAAATATACGATTATTAAAGGAAATGTTGGGAACGCTTTCGAAATCCGTCCTCATCCTCTGGGGAAAAGTGCGTCGCTTGTGGCAGCGAAAAAACTGGACCGCGAAACCATATCGCTCTACAACCTAACAATTCAGGCCACAAACACTGAGGAAAACAAGACGAGTACTAAAGTCTTTTCAGTCAATGTTTTGGACGAAAATGACAATAAGCCTCTCTTCTCGCGCAGAAACTACTCGATGACAATATTCAGCAACCTTTCCGCTGGATCTGAAGTATTGAGAGTTAGGGCAACAGATCGAGACATTGGCGAGAACGCGCGCATACGGTTTTCTTTACTCCATTTACAATCGCTTTTCCGCATCCTGCCTCAAAGTGGAACGATTTTATTGAATCAAAAAGTCCGCGTTGACCGTCGGCGTGATTTCACGCTGATAGTCGCCGCTCGAAACGGTGCGTACAAGAACATTGTTAATGTCGTGGTGAGAGTGATTCCAGTGAACGAAAATAGACCATTCTTTGAAAATCTAAAGTACAATGTCAAGGTTTCGGAAGCACTGAAAGTTGGTAACTCAGTGACAAAAGTCTTAGCTCGCGATTTCGACTACGGTATCAACGGGGCACTCAACTTCACGATCATCGCTGGAAATATGACATATTTCAAAATAGATGAGCAAGGTGTTGTACGGACACGAAAATCATTGCTAACTCTCGGTGGCTTAAACTGCTCGTTGACGTTAGTTGTAAGTGATAAGGGAAATCCACCGAAACGATCAGAACACATAGCTATTGTGTTTATCACAATCGAAGAGATAAACAAACACAAAGTGAAATTTGATCTTCCCATTTATCACGTGGCAGTTGCGGAAAACACACCAGTGGGAGCCACAATCCTCACTGTTCGTGCGGTTATTGGCATAAAAAAGTCAAGGCTTATTGAAAATATTCCTCAAGTCGAGGGGCGTCTAGAGAGAAAATCCAAAAGAGTTGTTTACTCGATTGCAAACCCAGACGGACATTTGTATTTCAGTATTGGTAAACATACTGGCGATATAAAGAATAAAGGATCCCTGGATTACGAAAAAGTCAAAGAATATAGGTTGGTACTGTTTGCAAAAGATACGGAGAAACAAGATGAAAATGGTCACCATGAGACAGATACTTCCGAAGTCTACGTGCACGTTTTGGACCTAAACGACAATGCTCCACGATTTGTGCTGGACATGTATCAGAAGGTCATCAGTGAAAACGTCTCTGTTGACTCGGCCATACTTCGGGTAACAGCGACGGATCCCGACTCAGGAACGAATGGTCAGGTGCATTACGCAATCGAAGGCGGAAACACCAACAACACATTCGATTTAGACAACCAAGGAGTGTTGAGACTACAACAGAGCCTTAAAACACAAGATACGAATTTGTTCAACTTGACAATTCGAGCACGAGATCATGGATTGCTCCCCAAAGTCTCCAGTCCAGTCTCTGTTTACGTCAGCGTAAAACGGTCTGCTCTGCCATGCAAGCAGAAACTGGCCTTTCAGCAAGGCGTGTACCTGGCAAATGTCAACGAGAGCACCCCAGTGAACACTAACATATTGCGCGTGCAGGCCAAAATGGGAGACTGTGGCTTTAAAGGCAGGATAACTTACTTCTTGTCGGATTTCAAAGATCCAGAGATAGATAATTACTTCGTTATCAACGCTAAGACAGGCGTAATAAGACTTATCAGACCGCTGGATTTTGAAGTGAGGGACAGGTACACGTTTTCAGTCGCTGCAGTAGGCATTCGAACCCAAGGTAATGTGGACACAGCTCACGTGCGAATCTCAGTGTTAGATGAAAATGATCATAAGCCACATTTTACCAAGCTCAACTACCAAAAACTCTTAACGACTCTGCCTGGGCCTGGGACCTCGGTTGCCATGTTAACTGCTACCGACGGGGACGAAGGCAAAAACAAAGAATTAGAGTATTTTCTAATAAGTGGATCAGATGGTTTTTTCAGGATAAATGGACGGACTGGTGTCATAACAACGACCAAGATCCTGATACATCAAAATCTTCGTCTGTTCAACATAACTGTGTCCGTCTCCGATCACGGTACACCACCGCTGACAGCCGAACGGCAAGCGCGTGTGTCCATCATGGTGTTTACTCCTCTCCAGTCCCCTTTCATTCTCATTTATAACAAAGCCACAACGATGACAATACGCTTTGATCTGAAGAATATGGCGTCAAGCAACATTGCTCAATATGGTGTTATTGTACAGGAGTATTCAGAAGACGAAAGTAATTTAAAAGAAATAACCAAAAAAGAACCGACTACGTGGTATCTCGTGAACAAGGCGGGAGAGGGAACTCAAGTTCACCAGAGATTCATCGCCAAAATTCTGCAATCGAACGTGAACATTGCGAAATCCAGAGTGTTAGACGTAACGATTGGTGACGAAGAACGGTGCGAAAATAAGCGAGGTGATAAAGACTATTGCAACGGACCACTAAAGTCAGGCAAGAGATACAGATTCCAGTTACGCGCTTATCTCAAGTCCACAGGACCGTTTAGTGATGTTGAAATCCAGGACAGTGCTCTTTCGGATCCTCACTACACAGTTGAAGCGCCTGACCCTAAAGCCAGCGCGACTCGCAAGAACGTGGGGAGGCGCAGCTACGACGCAGTGGTATACAGCGTGGGCTCAGCCCTTGTGGTTGTTATAATATTGGCGTTTTTGAGAGGATTTTATCGATTAAAGCTAGACAGGAAAAGGATTCATGAAGAGAAGAAAAGGCGCATTTCATTTCCGATCAGCAATCCACGCTTCCAAGAACCAACTTCCCCGGTGGAAAAGATTAGAAACCCAGGACCAGCCAAGACGATCGTTGCCGTCAATCACGACAAAGGCTCAGAGTTCATCCCAAATGACGAAGACGAGGGCTCTTCCCCAGACTCCGCATTAGATGAGACCACAAGGTTAACCCACGAGAGAAGGCGTCCCACTTTACAAGAAGTCAGATTAAAAAATTATTTCAATTCCGTGGAATCATCTTCCTGTGCATCTTGTGAGCACGTGAAAATCTACTGCGTGCAGGAAACAACTACGTAA

Transcript

chr2Alt.g2909.t2

TCAAATTTGAAAAAATTGTGAAATGTGTTTGATTATCTAGGAATTAAATCAAACAAATTTTTTTCTCGGATACTTTATTGCTTCAAACTTCAAACATGGTGACAATTAACCACTGTCATTTCAAGGAAATTAATTTCTAAATGGAAGGAATTTAAAAGCATTTTCATCTTGAAAACAGTTGACCATGGAAAGAAAACAAATGGAGCTTCGACGAACTGTACCTGTGATATTTTTGCTTATTAACTTCGGGGTCTTCATATCGTCCGAAAAAGTGGTTATTGATGATCCACAATCCACCGTCATATGTATCTCGGGAAACACATCGTATGACGTAACATTTGTTAGGGACATCAACGCTGGTGTCTTCACGTCCTTGGGTGAGTCGAGCAGTGTGAGGAGTTGTGTTCGAAAGGCTTGTAACATGCGAGCGCCGAATGATTACCTAGTGGCTTTCTTGGTTGAAAAAAACTGTTACATGGTGCGATGTCACTCCAAAGGTCACTGCATGACGAAGCCATCAGACTCTCCAAGTCATTTCAGAATCTCTATCACTCCTTACACATGGTTCGATGCAGCTCCTGTCTTTACAAATGCCCCGAAGGTGCTCCAAGTAAAAGAAAACAACCAACGCGGTCAAATTATCACAAACATCCATGGACATGCAAGAAGCCGCTGGCATAACAATGCATCCATCAAATATACGATTATTAAAGGAAATGTTGGGAACGCTTTCGAAATCCGTCCTCATCCTCTGGGGAAAAGTGCGTCGCTTGTGGCAGCGAAAAAACTGGACCGCGAAACCATATCGCTCTACAACCTAACAATTCAGGCCACAAACACTGAGGAAAACAAGACGAGTACTAAAGTCTTTTCAGTCAATGTTTTGGACGAAAATGACAATAAGCCTCTCTTCTCGCGCAGAAACTACTCGATGACAATATTCAGCAACCTTTCCGCTGGATCTGAAGTATTGAGAGTTAGGGCAACAGATCGAGACATTGGCGAGAACGCGCGCATACGGTTTTCTTTACTCCATTTACAATCGCTTTTCCGCATCCTGCCTCAAAGTGGAACGATTTTATTGAATCAAAAAGTCCGCGTTGACCGTCGGCGTGATTTCACGCTGATAGTCGCCGCTCGAAACGGTGCGTACAAGAACATTGTTAATGTCGTGGTGAGAGTGATTCCAGTGAACGAAAATAGACCATTCTTTGAAAATCTAAAGTACAATGTCAAGGTTTCGGAAGCACTGAAAGTTGGTAACTCAGTGACAAAAGTCTTAGCTCGCGATTTCGACTACGGTATCAACGGGGCACTCAACTTCACGATCATCGCTGGAAATATGACATATTTCAAAATAGATGAGCAAGGTGTTGTACGGACACGAAAATCATTGCTAACTCTCGGTGGCTTAAACTGCTCGTTGACGTTAGTTGTAAGTGATAAGGGAAATCCACCGAAACGATCAGAACACATAGCTATTGTGTTTATCACAATCGAAGAGATAAACAAACACAAAGTGAAATTTGATCTTCCCATTTATCACGTGGCAGTTGCGGAAAACACACCAGTGGGAGCCACAATCCTCACTGTTCGTGCGGTTATTGGCATAAAAAAGTCAAGGCTTATTGAAAATATTCCTCAAGTCGAGGGGCGTCTAGAGAGAAAATCCAAAAGAGTTGTTTACTCGATTGCAAACCCAGACGGACATTTGTATTTCAGTATTGGTAAACATACTGGCGATATAAAGAATAAAGGATCCCTGGATTACGAAAAAGTCAAAGAATATAGGTTGGTACTGTTTGCAAAAGATACGGAGAAACAAGATGAAAATGGTCACCATGAGACAGATACTTCCGAAGTCTACGTGCACGTTTTGGACCTAAACGACAATGCTCCACGATTTGTGCTGGACATGTATCAGAAGGTCATCAGTGAAAACGTCTCTGTTGACTCGGCCATACTTCGGGTAACAGCGACGGATCCCGACTCAGGAACGAATGGTCAGGTGCATTACGCAATCGAAGGCGGAAACACCAACAACACATTCGATTTAGACAACCAAGGAGTGTTGAGACTACAACAGAGCCTTAAAACACAAGATACGAATTTGTTCAACTTGACAATTCGAGCACGAGATCATGGATTGCTCCCCAAAGTCTCCAGTCCAGTCTCTGTTTACGTCAGCGTAAAACGGTCTGCTCTGCCATGCAAGCAGAAACTGGCCTTTCAGCAAGGCGTGTACCTGGCAAATGTCAACGAGAGCACCCCAGTGAACACTAACATATTGCGCGTGCAGGCCAAAATGGGAGACTGTGGCTTTAAAGGCAGGATAACTTACTTCTTGTCGGATTTCAAAGATCCAGAGATAGATAATTACTTCGTTATCAACGCTAAGACAGGCGTAATAAGACTTATCAGACCGCTGGATTTTGAAGTGAGGGACAGGTACACGTTTTCAGTCGCTGCAGTAGGCATTCGAACCCAAGGTAATGTGGACACAGCTCACGTGCGAATCTCAGTGTTAGATGAAAATGATCATAAGCCACATTTTACCAAGCTCAACTACCAAAAACTCTTAACGACTCTGCCTGGGCCTGGGACCTCGGTTGCCATGTTAACTGCTACCGACGGGGACGAAGGCAAAAACAAAGAATTAGAGTATTTTCTAATAAGTGGATCAGATGGTTTTTTCAGGATAAATGGACGGACTGGTGTCATAACAACGACCAAGATCCTGATACATCAAAATCTTCGTCTGTTCAACATAACTGTGTCCGTCTCCGATCACGGTACACCACCGCTGACAGCCGAACGGCAAGCGCGTGTGTCCATCATGGTGTTTACTCCTCTCCAGTCCCCTTTCATTCTCATTTATAACAAAGCCACAACGATGACAATACGCTTTGATCTGAAGAATATGGCGTCAAGCAACATTGCTCAATATGGTGTTATTGTACAGGAGTATTCAGAAGACGAAAGTAATTTAAAAGAAATAACCAAAAAAGAACCGACTACGTGGTATCTCGTGAACAAGGCGGGAGAGGGAACTCAAGTTCACCAGAGATTCATCGCCAAAATTCTGCAATCGAACGTGAACATTGCGAAATCCAGAGTGTTAGACGTAACGATTGGTGACGAAGAACGGTGCGAAAATAAGCGAGGTGATAAAGACTATTGCAACGGACCACTAAAGTCAGGCAAGAGATACAGATTCCAGTTACGCGCTTATCTCAAGTCCACAGGACCGTTTAGTGATGTTGAAATCCAGGACAGTGCTCTTTCGGATCCTCACTACACAGTTGAAGCGCCTGACCCTAAAGCCAGCGCGACTCGCAAGAACGTGGGGAGGCGCAGCTACGACGCAGTGGTATACAGCGTGGGCTCAGCCCTTGTGGTTGTTATAATATTGGCGTTTTTGAGAGGATTTTATCGATTAAAGCTAGACAGGAAAAGGATTCATGAAGAGAAGAAAAGGCGCATTTCATTTCCGATCAGCAATCCACGCTTCCAAGAACCAACTTCCCCGGTGGAAAAGATTAGAAACCCAGGACCAGCCAAGACGATCGTTGCCGTCAATCACGACAAAGGCTCAGAGTTCATCCCAAATGACGAAGACGAGGGCTCTTCCCCAGACTCCGCATTAGATGAGACCACAAGGTTAACCCACGAGAGAAGGCGTCCCACTTTACAAGAAGTCAGATTAAAAAATTATTTCAATTCCGTGGAATCATCTTCCTGTGCATCTTGTGAGCACGTGAAAATCTACTGCGTGCAGGAAACAACTACGTAATCGTGTCGTTGTCTAGCAACCCACGGTAACTTGAGGGACAAGGGTGGATAGAACCAAATTATCTCTTGTAGAAAATTACTTGTCCAGTCTAGCAGTCACGCTTGTGTCGCGTGACTTTCATAAGAGTAACAGTTCAAACGACTTATTCACAATGTACTGTTTGTATAAGCGCGCTATTAATTTCAATTCATTTCGTATTCTTGCTTGTCAACCCATCGATGAAATACGACGGAACATCAATTCTCCTCGAAATCGGAACGCCATCCGAAAAAAAGCCCGTTTTTCAAGGGCCATAAAAGATTACAACTCCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P33450	Cadherin-related tumor suppressor OS=Drosophila melanogaster OX=7227 GN=ft PE=1 SV=3
Q2PZL6	Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV=2
Q6V0I7	Protocadherin Fat 4 OS=Homo sapiens OX=9606 GN=FAT4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18861 all species →	PTP_tm	TM proximal of protein tyrosine phosphatase, receptor type J	Family	Interproscan
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR039808 all species →	Family	Cadherin	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR041201 all species →	Domain	PTPRJ, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027 all species →	CADHERIN-23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007043 all species →	Biological Process	cell-cell junction assembly	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016339 all species →	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0034332 all species →	Biological Process	adherens junction organization	Interproscan
GO:0044331 all species →	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098742 all species →	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16498	PCDHD1; protocadherin delta 1	-	Cell adhesion molecules	ko04515	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.