Gene detail

Detailed information of g2912.t1 in Tripedalia maipoensis

Genomic Location: scaffold_12:22187089...22207452
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21413 all species →	SHQ1-like_CS	SHQ1-like, CS domain	Domain	Interproscan
PF04925 all species →	SHQ1	SHQ1 protein, Shq1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008978 all species →	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR048696 all species →	Domain	SHQ1-like, CS domain	Interproscan
IPR007009 all species →	Domain	Shq1, C-terminal domain	Interproscan
IPR007052 all species →	Domain	CS domain	Interproscan
IPR039742 all species →	Family	Protein Shq1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12967 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000493 all species →	Biological Process	box H/ACA snoRNP assembly	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14764	SHQ1; protein SHQ1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.