Gene detail

Detailed information of g2913.t1 in Acropora digitifera

Genomic Location: chr2Alt:6232660...6237058
NR annotation: XP_044177342.1, peptidyl-prolyl cis-trans isomerase-like 3 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q812D3	Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rattus norvegicus OX=10116 GN=Ppil3 PE=2 SV=1
Q9H2H8	Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo sapiens OX=9606 GN=PPIL3 PE=1 SV=1
Q9D6L8	Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus musculus OX=10090 GN=Ppil3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00160 all species →	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002130 all species →	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR029000 all species →	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan
IPR044666 all species →	Family	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-like	Interproscan
IPR024936 all species →	Family	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	Interproscan
IPR020892 all species →	Conserved_site	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45625 all species →	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000413 all species →	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12734	PPIL3; peptidyl-prolyl cis-trans isomerase-like 3	EC:5.2.1.8	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2913.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

57.0Max TPM

27.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	27.03	56.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	56.96
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	55.87
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	55.66
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	45.24
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	42.48
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	40.97
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	40.75
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	38.95
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	38.71
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	34.72
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	32.47
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	31.91
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	31.86
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	28.33
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	27.44
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	25.80
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	25.50
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	24.09
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	23.99
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	23.78
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	23.72
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	23.22
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	22.56
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	22.43
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	21.36
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	19.91
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	18.25
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	18.12
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	17.39
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	17.03
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	16.97
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	16.78
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	16.40
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	14.45
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	13.22
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	11.91
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	11.74
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	11.65
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	11.49

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.