Gene detail

Detailed information of g29162.t1 in Acropora digitifera

Genomic Location: chr14Alt:990398...1006435
NR annotation: XP_029189342.1, glycogen phosphorylase-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g29162.t1

ATGGGAGAGAAACCGTTGTCAGATCTGGATAGGAAGCGACAAATCTCTCTTCGGAAGCTCCCTGTTGTGGAGGACTTGAACAGCATAAAAGAATCCTTCAATCGCCATTTGCACTACTCGCTTGTAAAAGACCGCAATGTTGCCACGAAGCGCGATTATTTCAACTCTCTGGCTCACACAGTGAAGGATCACTTAGTCGGAAAGTGGATTCGTTCACAACAGTCTTATTATGAGAAGGATCCAAAGCGTGTCTACTATCTTTCCTTGGAATATTACATGGGTCGTGCTTTAACCAACACCATGATCAATTTGGGGATTCAAGGAGAGTGTGACGAGGCCATGTACCAGCTTGGTTTGGACATGGAAGAACTAGAAGGAGTTGAAGAAGATGCTGGTCTTGGAAATGGAGGACTTGGTAGACTTGCAGCATGTTTCCTTGATTCACTTGCAACCCTTGGTTATCCTGCTTATGGTTATGGAATCAGATATGAATATGGAATATTCAAACAATCCATTGATGGCAATGGGGGTCAGGTTGAGTTGCCAGATGACTGGCTCAAGTTTGGAAACCCTTGGGAGAAAGCCAGACCAGAGTATATGATACCCGTTGAGTTTTATGGCCGAGTGGAGTCAGACGCCAGTGGAAAGAACCATCGCTGGGTGGACACTAGCTTGATTTTTGCAATGCCATATGATCAACCTATCCCTGGATATGGCAATAACACCTGTAATACCATGAGACTGTGGGCAGCCAAGTCTCCAAAGGGCTTTGACCTTTCTTACTTCAATGATGGAGATTACATCAAGGCAGTTCTTGACAGGAATTTAGCAGAGAATATATCAAGAGTCTTGTATCCCAATGACAATTTTTTTGAAGGGAAAGAATTGCGCTTAAAGCAGCAGTACTTCATGGTGTCTGCCACTCTTACAGACATTGTACGAAGGTACAAAGCACCCAAGTTTGGTTCCAAAGCACCTGTTAGAATGACTTTTGATGATTTTCCAGACAAGGTTGCCATTCAGCTGAATGATACACATCCCTCATTGGCCATACCTGAGCTAATGAGGGTCTTCTTAGACAAGGAGAAACTTTCATGGGACAAGGCCTGGGATATTTGTGTGAAAACCTTCAGTTACACCAATCATACTGTCCTCCCAGAAGCTCTGGAGAGGTGGCCAGTGAACATGCTTGAGTATATTCTACCACGGCACCTTCAGATCATCTATGAAATTAATTCCATCTTCCTGAAGAAAGTGGAGAAGTTGTGGCCTGGAGACCTCGACAGGATGCGACGGATGTCATTGGTCGAGGAAGGTCCTGAAAAACGCATCAACATGTCGCACTTGTGCATTGTAGGATCTCACACAACCAATGGTGTGGCAGCTCTGCACTCAGAACTGCTGAAAACAACCGTATTCAAAGATTTCTATGAAATGTTTCCTGAGAAGTTTCAAAATAAAACAAATGGTGTGACACCCCGTCGCTGGCTTCTTCTGTGTAATCCTGGATTGTCAGACCTCATTTGTGAGAAAATTGGCGATGATTGGATTACAGATTTGAGCAAGTTGAAAAAGTTGGAGCGGTATGTTAAGGACAGGAATTTCAGGCATTCCTTCATGAGGAAAAAACAGGAAAACAAGATTCGACTTGCAGCGTTCATCAAAGAGGAGTTTGACGTGGATGTCAACGTTAACTCTATTTTCGATGTTCAAGTGAAGCGAATCCATGAATACAAACGCCAGCTGATGAACTGTCTTCATGTCATCGTGATGTACAACAGACTTAAAGCCGACCCAAACATGGATTTTGTCCCTCGCACTATCATGATTGGAGGAAAGGCAGCTCCTGGCTACTACATGGCAAAACTGATTATTAAGCTTTTCAACAACATTGCAAGAGTGATTAACAATGACCCCATCATTGGCGACAAGCTAAAGCTGGTCTTCCTCGAAAATTACAGAGTTTCTCTAGCAGAGAAGGTCATCCCAGCCGCTGACCTTTCTGAGCAGATCTCCTTGGCGGGAACAGAGGCATCTGGAACTGGAAACATGAAATTCATGATGAATGGAGCACTGACCATCGGTACCCTGGATGGAGCCAACGTGGAAATGAGAGAAGAAATGGGAAAAGAAAACATCTTCATTTTTGGAATGACGGTGGAAGAAGTGAATGCGCTCAGGGCAAAAGGCTACAAGTCAATGGATTACTATGACAACAGCATGGAGCTCAGGAAAGCCATCAATCAAATCAGGGACAACTTCTTCTCACCCACTGAGCCTGGCGCTTTTCAGGACATTGTCAATTCTTTGCTTTACCATGACAGGTTCCTTCTTATGGCCGACTTTGATGCATATCTCAAATGTCAGGAACGAGTCAGTGAGGCCTACCAGGATCCTGATCATTGGTTTTCCATGGCTATTCACAACGTGGCTTCTTCTGGCAAATTTTCCAGCGATAGAACCATCCAACAATATGCAGAAGAAATCTGGAATGTTAAACCACTCAGTGTCCATGACATGAAACCAGTCAGCATCAAATAA

Transcript

chr14Alt.g29162.t1

AGACTTGGCCCCAGCTTGCTTGTTTGCATTGTAGATCGCATCGAAGGCAGGGAAGCGATAGATAGTTTGTTAGTTCTTTCCTGTCTCGGTTTGTAAAAGCATGGGAGAGAAACCGTTGTCAGATCTGGATAGGAAGCGACAAATCTCTCTTCGGAAGCTCCCTGTTGTGGAGGACTTGAACAGCATAAAAGAATCCTTCAATCGCCATTTGCACTACTCGCTTGTAAAAGACCGCAATGTTGCCACGAAGCGCGATTATTTCAACTCTCTGGCTCACACAGTGAAGGATCACTTAGTCGGAAAGTGGATTCGTTCACAACAGTCTTATTATGAGAAGGATCCAAAGCGTGTCTACTATCTTTCCTTGGAATATTACATGGGTCGTGCTTTAACCAACACCATGATCAATTTGGGGATTCAAGGAGAGTGTGACGAGGCCATGTACCAGCTTGGTTTGGACATGGAAGAACTAGAAGGAGTTGAAGAAGATGCTGGTCTTGGAAATGGAGGACTTGGTAGACTTGCAGCATGTTTCCTTGATTCACTTGCAACCCTTGGTTATCCTGCTTATGGTTATGGAATCAGATATGAATATGGAATATTCAAACAATCCATTGATGGCAATGGGGGTCAGGTTGAGTTGCCAGATGACTGGCTCAAGTTTGGAAACCCTTGGGAGAAAGCCAGACCAGAGTATATGATACCCGTTGAGTTTTATGGCCGAGTGGAGTCAGACGCCAGTGGAAAGAACCATCGCTGGGTGGACACTAGCTTGATTTTTGCAATGCCATATGATCAACCTATCCCTGGATATGGCAATAACACCTGTAATACCATGAGACTGTGGGCAGCCAAGTCTCCAAAGGGCTTTGACCTTTCTTACTTCAATGATGGAGATTACATCAAGGCAGTTCTTGACAGGAATTTAGCAGAGAATATATCAAGAGTCTTGTATCCCAATGACAATTTTTTTGAAGGGAAAGAATTGCGCTTAAAGCAGCAGTACTTCATGGTGTCTGCCACTCTTACAGACATTGTACGAAGGTACAAAGCACCCAAGTTTGGTTCCAAAGCACCTGTTAGAATGACTTTTGATGATTTTCCAGACAAGGTTGCCATTCAGCTGAATGATACACATCCCTCATTGGCCATACCTGAGCTAATGAGGGTCTTCTTAGACAAGGAGAAACTTTCATGGGACAAGGCCTGGGATATTTGTGTGAAAACCTTCAGTTACACCAATCATACTGTCCTCCCAGAAGCTCTGGAGAGGTGGCCAGTGAACATGCTTGAGTATATTCTACCACGGCACCTTCAGATCATCTATGAAATTAATTCCATCTTCCTGAAGAAAGTGGAGAAGTTGTGGCCTGGAGACCTCGACAGGATGCGACGGATGTCATTGGTCGAGGAAGGTCCTGAAAAACGCATCAACATGTCGCACTTGTGCATTGTAGGATCTCACACAACCAATGGTGTGGCAGCTCTGCACTCAGAACTGCTGAAAACAACCGTATTCAAAGATTTCTATGAAATGTTTCCTGAGAAGTTTCAAAATAAAACAAATGGTGTGACACCCCGTCGCTGGCTTCTTCTGTGTAATCCTGGATTGTCAGACCTCATTTGTGAGAAAATTGGCGATGATTGGATTACAGATTTGAGCAAGTTGAAAAAGTTGGAGCGGTATGTTAAGGACAGGAATTTCAGGCATTCCTTCATGAGGAAAAAACAGGAAAACAAGATTCGACTTGCAGCGTTCATCAAAGAGGAGTTTGACGTGGATGTCAACGTTAACTCTATTTTCGATGTTCAAGTGAAGCGAATCCATGAATACAAACGCCAGCTGATGAACTGTCTTCATGTCATCGTGATGTACAACAGACTTAAAGCCGACCCAAACATGGATTTTGTCCCTCGCACTATCATGATTGGAGGAAAGGCAGCTCCTGGCTACTACATGGCAAAACTGATTATTAAGCTTTTCAACAACATTGCAAGAGTGATTAACAATGACCCCATCATTGGCGACAAGCTAAAGCTGGTCTTCCTCGAAAATTACAGAGTTTCTCTAGCAGAGAAGGTCATCCCAGCCGCTGACCTTTCTGAGCAGATCTCCTTGGCGGGAACAGAGGCATCTGGAACTGGAAACATGAAATTCATGATGAATGGAGCACTGACCATCGGTACCCTGGATGGAGCCAACGTGGAAATGAGAGAAGAAATGGGAAAAGAAAACATCTTCATTTTTGGAATGACGGTGGAAGAAGTGAATGCGCTCAGGGCAAAAGGCTACAAGTCAATGGATTACTATGACAACAGCATGGAGCTCAGGAAAGCCATCAATCAAATCAGGGACAACTTCTTCTCACCCACTGAGCCTGGCGCTTTTCAGGACATTGTCAATTCTTTGCTTTACCATGACAGGTTCCTTCTTATGGCCGACTTTGATGCATATCTCAAATGTCAGGAACGAGTCAGTGAGGCCTACCAGGATCCTGATCATTGGTTTTCCATGGCTATTCACAACGTGGCTTCTTCTGGCAAATTTTCCAGCGATAGAACCATCCAACAATATGCAGAAGAAATCTGGAATGTTAAACCACTCAGTGTCCATGACATGAAACCAGTCAGCATCAAATAAACAGGCTCCATTGCTTCGCCCTTTGTTGGGCATACTGTTGATTATAGTAGCCGAAATTCTCAAATGAATTGAATGCGAAGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9XTL9	Glycogen phosphorylase OS=Drosophila melanogaster OX=7227 GN=Glyp PE=2 SV=2
Q9WUB3	Glycogen phosphorylase, muscle form OS=Mus musculus OX=10090 GN=Pygm PE=1 SV=3
P00489	Glycogen phosphorylase, muscle form OS=Oryctolagus cuniculus OX=9986 GN=PYGM PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00343 all species →	Phosphorylase	Carbohydrate phosphorylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000811 all species →	Family	Glycosyl transferase, family 35	Interproscan
IPR035090 all species →	Conserved_site	Phosphorylase pyridoxal-phosphate attachment site	Interproscan
IPR011833 all species →	Family	Glycogen/starch/alpha-glucan phosphorylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11468 all species →	GLYCOGEN PHOSPHORYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008184 all species →	Molecular Function	glycogen phosphorylase activity	Interproscan
GO:0004645 all species →	Molecular Function	1,4-alpha-oligoglucan phosphorylase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005980 all species →	Biological Process	glycogen catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00688	PYG, glgP; glycogen phosphorylase	EC:2.4.1.1	Insulin resistance	ko04931	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g29162.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

212.9Max TPM

170.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	170.21	212.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	212.93
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	199.32
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	195.97
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	195.32
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	194.40
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	190.07
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	189.82
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	189.39
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	189.32
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	188.54
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	184.41
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	179.77
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	179.72
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	179.21
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	178.82
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	177.37
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	173.61
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	172.46
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	172.14
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	171.79
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	171.47
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	171.45
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	171.37
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	167.78
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	163.26
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	161.28
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	160.01
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	159.54
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	158.47
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	157.06
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	155.08
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	153.12
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	147.46
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	146.22
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	144.27
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	139.56
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	137.67
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	137.37
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	121.16

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.