Gene detail

Detailed information of g29178.t2 in Acropora digitifera

Genomic Location: chr14Alt:1116086...1127087
NR annotation: XP_015776575.1, PREDICTED: DBH-like monooxygenase protein 1 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr14Alt.g29178.t2

AGCTTACAAGTAAGAGCCTTGATCGGCACTATTCGCATTACGTATGGGCAAGCAAGTTAATAGGATGGGAAAAATGTTATCTTCTGCTCTCTCTGCAGCTTTTCTTCTCCACATAGTTTTAGTGCATGCTGTTGCAACCGATTTATTATCTGCCCATCGTTTCTTTGCATCACTCGACGAAGATCAGAGCGTGAAGTTGTACTGGAATGTTACAACAACAAACAAGGACATTTTCTTTACCGTTGAGGCCAAAACAACTGGATGGATAGGATTCGGTATTTCCAGCGGACAGGGAAAAATGCAAGGAGCAGATATCGTGATTGGCTGGGTGAAGGATGGCGTACCTTATTTTCAGGATCGGCACGCTGATGGTCACATGATGCCAGAGATAGATGCTCAACAAGATTATAAATTGATTTCACTGACGGAGGAAAATGGAAAAACTATTATGAAATTTAAGCGCAAATTTGACACTTGCGATGCAGATGACAATAAAATTGAGCCAGGAACAACCAAAGTTATCTATGCCTACCACCCCAGCGATCCCTCAACAGCAAGATCCATTCCGCAACACAGTCCTGTAAACCGAGGTGCAAGAAGTGTGCTCTTACTCAATAGCGGAAAAAAGAGATCAGCTTTACCACCTGGGACCAAATACTTCGACTTAGTACACAACAAGACAGCTATCCCTGGGGATAAAACCAGTTACATGTGTGTAGCATTGGAAATGCCCAAATTGAACGAAACACATCACATCATACAGATGAATCCTGTCATCCAAGCAGGCCACGAAGGAGTGGTCCATCACATACTTGTGTATGAATGCAGAGACGATTACCCAGACCACCATTTGAACTTTACAGGCCATTGTTACAGTCCAGACATGCCTCCTCCGGTGGCTAAATGCACTGGAGCTACAACAATTGCTGCTTGGGCCATCGGAGGGAATGGATTCTCTTATCCTGAGCACGTTGGTTTTCCCATTGGAACACCTGACAGTCCAAAAGTCGTAATCCTGGAGATACACTATGATAACCCAATGAGTAAACAAGGCATGATAGACAGTTCTGGCCTTCGGTTTTACTACACAAAACAACTGAGGAAGTATGATGCAGGAGTGCTGTACGTTGGAGCTTTTGTTGACTATAGACTGATGATTCCACCAAAAGAGACGAACTGGCAAATCAACGGCTTCTGCAGTGAAGAATGCACTAGAGAGGGCTTCAAGAACTCCATTCTTCCTGGAGGCGGGGTGAATATAGTAGCTTCGCTTTTACATATGCATTTAGCAGGTCGTAAAGCCGTTGTGCGTCGCATCAGAAATGGAGTGGAGCATTCTGAGATAGCTAGAGATGACCATTACGATTTCAACTTTCAGGAATACCTTATGTTGGAGAATGAAATCCATGTCGCTTCGGGAGACTCTTTGATCACCGAATGCTTCTACAATACAAGAGACAGAAATTTGGTTACCACCGGAGGCCTTGGCACAACAGATGAGATGTGCTTGGCTTTTCTCATATATTACCCGAAAGTAAACTTCAGCAAATGCATTTCAAGAGAGGGGCAAGCATTGAAGAAATGGGATGACAAATATCTCAAAAAAGATTATGAACAACTGCGCAAGCCGACATTCTGGACAAAAAACAACAGCCAGGGATTAAGAGAAGCCTTCAAAGACACTGATCAATACTACGCGAGATGCCTGTCACGTGCCGACACCGCACTACCGGGTCTTTCTTATAAAGAAACGAACAAGACGCAAATCCAGATTCCTTACAGGCCAGAATCTCTTTGCACTGTTTCCATGGCTACTAGTACTAGCACTGTTTCCATGGCTACTAGTATTATTCCACAATGCTTAGGAGGCATAATCGCTCTTGCATTCTGGGTTGCTATCCGGTGAGCGGCCAACCACCTATCCATGCCCTCGTCGAGGACCTGATCCAAAGCATATGGGAGAAGTTCCTGGGACGAACGTTGATCAAGTTTTCGTTCACATGCACCAACCACGTCCCCACGTTGCAAATGCATATTCTTAGTCGATGCAATTTCTTGGATTTTTCTTTACTTTAACCTTTGTTGTTTATCACACCATAAAAGTATAATTAACCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CXI3	DBH-like monooxygenase protein 1 OS=Mus musculus OX=10090 GN=Moxd1 PE=1 SV=1
Q6UVY6	DBH-like monooxygenase protein 1 OS=Homo sapiens OX=9606 GN=MOXD1 PE=1 SV=1
Q5TZ24	DBH-like monooxygenase protein 1 homolog OS=Danio rerio OX=7955 GN=moxd1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03351 all species →	DOMON	DOMON domain	Domain	Interproscan
PF03712 all species →	Cu2_monoox_C	Copper type II ascorbate-dependent monooxygenase, C-terminal domain	Domain	Interproscan
PF01082 all species →	Cu2_monooxygen	Copper type II ascorbate-dependent monooxygenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005018 all species →	Domain	DOMON domain	Interproscan
IPR008977 all species →	Homologous_superfamily	PHM/PNGase F domain superfamily	Interproscan
IPR024548 all species →	Domain	Copper type II ascorbate-dependent monooxygenase, C-terminal	Interproscan
IPR000323 all species →	Domain	Copper type II, ascorbate-dependent monooxygenase, N-terminal	Interproscan
IPR000945 all species →	Family	Dopamine beta-hydroxylase-like	Interproscan
IPR036939 all species →	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamily	Interproscan
IPR045266 all species →	Domain	Copper-dependent monooxygenases, DOMON domain	Interproscan
IPR014784 all species →	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase-like, C-terminal	Interproscan
IPR028460 all species →	Family	Tyramine beta-hydroxylase/Dopamine beta-hydroxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10157 all species →	DOPAMINE BETA HYDROXYLASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016715 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0004500 all species →	Molecular Function	dopamine beta-monooxygenase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006589 all species →	Biological Process	octopamine biosynthetic process	Interproscan
GO:0030667 all species →	Cellular Component	secretory granule membrane	Interproscan
GO:0042420 all species →	Biological Process	dopamine catabolic process	Interproscan
GO:0042421 all species →	Biological Process	norepinephrine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g29178.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g29178.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.