Gene detail

Detailed information of g29193.t1 in Acropora digitifera

Genomic Location: chr14Alt:1234576...1257145
NR annotation: XP_029189362.2, fibropellin-1-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g29193.t1

ATGATGCAGTCAACCTGTTGGATTAGTTTGGTAACAGTATTAGTTTTGAATTTGTCACATCTCCACGTTAGCCATGCAAAGGGAACCTTGTCAATTCAGTTTGTGGATTACAATAACCCAAGTTCACGAGACAATGCGGGTTATTGCTGCGATTGTTGTAGCTTCTTTGGCTATTGCCCTAATAAATGTGATAACTTCTTCAGACTTTACGCAGTGCCATACCCTGTGAACCATTATGGTGTCTCGAGTGCTTGGAATCACTGGGAGACACATGTTATGAGTGGAGGTGATAGTTTTTCCTTTCCTGGTTATGGTCAGTCTCTTGGTAATCATAACAACCCTGTGACGTATCACTTCAATGGAAGGTGGCAGGGAGCATTTGGTGTTATTTTGAAAGTATGGGATGATGACAGTGGGAATATCTTTGGCATTGGTAGAGCTGATGATCTTGTTGATGAAATTTTTGCAAATGTGCCTAATGTTCCTGCTCAAAAAAATCAACAAAGTGCTGTGGCAAAGAGTGTGACGTTGAATGGTCGAAGATCTACCACCAGAATTTTAGTCCGTGTTTATTGTGATGCTAATTATTATGGCTCGGATTGTAACACATACTGCGTTGGAAGAGATGATGCTGGTGGTCATTACAGATGTGACGAGAACACGGGAAACAAAATCTGTTTGGCTGGATGGATGGGATCCAGCTGTCTTACTGCAATTTGTAAGACTGATTGTGATCCAATCCATGGCTCCTGCACAACACCACACACTTGCATCTGTGCCAGTGGTTGGACTGGGTTAAATTGTGATAGATGCATAAAGAAAGCTGGTTGTTCGGCAGTGCATGGTGACTGTGATCAAGGAAATGACTGTGTTTGTCGCCCTGAGTGGACAGGTCCCAATTGTGATCAAGACTTGAATATGTGCCGTGATTCCCAATTGTGTAAGAACGGTGGGACATGCATTAACACAGACCCTGATCAGCACAAGTGTGATTGTCCTCCTGGTTATACTGGTGCAGATTGTGCAAAAGAAATCAATCTCTGTGCTCCGAGTCTTTGTCAAAACAATGGAACTTGCACCAACTTCAGAACCTACTACACTTGCACTTGTCCAGCTGGATTTGAGGGAGCTAACTGCCAGACAGACATTGATGATTGTAAGCAAGCCAAATGTAGAAATGGAGCAACATGCAAGGATGCAGTAAATGATTATCAGTGTGAATGCGTGGCAGGATTCACAGGGCGCAATTGTGAAATTAACATTGATGAGTGCCAAACAGCTCCTTGTAACAACAATGGAACCTGTATTGATCAAGTGAATGGTTACAGATGCAATTGTCTTCAAGGATTCGGCGATTTCAATTGTTCCACCAACATAGATGACTGTAATTCCACCCTCTGCAGCAATGGAGGCTCCTGTGTGGATGAGGTGAACAACTTCCATTGTGTGTGTCCTGCTGGGTATCTTGGTAGGACTTGCAGCAATGCAACAGATGAATGCTCGACTTTGCCTTGTAAAAATGGTGGAAGTTGCTTGGATTTGCATCGGGATTATAACTGTACATGCCCAGCTGGTTTCACAGGCAAGGATTGTGAAACTAACATCAATGACTGCATATCACCAACACAGTGTAACCAGGGTGTCTGCCGTGATGGTATCGACAATTTCACTTGTGTCTGTCACAGTGGATTCACAGGAGCGCTTTGTGACATAAATATAAACGAGTGTCTTAATCATCAATGTCAAAATGGAGCCTCGTGTAATGATGGCATTGCTCAGTACACCTGCACATGCGCTAATGGATTTGATGGGCCTCTGTGTAGTAACAATATCAATGACTGCGCATCAGCCTTGTGCATTAACAATGCTACATGCATGGATAAGATTGCTGATTACGCCTGTAACTGCAGCCTTGGTTTCACTGGTCGACACTGCGAGATACCCATTGATTACTGTGCTTATCAGGGCTGTAACAACAGTGGCACGTGTGTTAATGAACGAGGCTACAGACGGTGTCTTTGCCCGCCAGGGTTCAATGGCTCCAGTTGTGAAATAACACCTTGCATGATGAATCCATGTTTTAGGGGCACGTGTTATATGCTTTCTGATCTCAGATACAAGTGCCGATGTAGTCAAGGCTTCACCGGAATGCATTGCGATGTTGATATCGATGACTGTGATCCAAGGAACAGCAAATTTATAGTGGAAGATCAAGTAGCTCCTGTTTTTTGTGGGCAACATGGGAAGTGTATCGATGGACTTAATGAATATTCGTGCTTGTGTGACAGAGGGTGGACTGGAAAGGAATGTACAGTTGATATTGATGAGTGCTCTCCAAATCCGTGTAAAAACAATGGAGATTGTGTCCAGACATTCAATGCCAGTTATCTTTGTGGTTGTAAAGCTGGATACACTGGAGTAAACTGCACAGAAAATATTGATGATTGTCAAAATAATTCCTGCCAGGCAAACTCATCTTGTGTTGATAAACTCAATGGTTATGACTGCATCTGTCCTGCTGGTCTCAAGGGAATACATTGTCAGTCAAATTCATCGTGGTGTGAGGGTCCCAGTCCATGTTTCAACGGCAACTGCACTGATGTGGGTGATAACTACACATGCGCTTGCCTCCCAGGTTATACAGGTCAGCGGTGTGAAACAGATATTAACGAGTGTGAATCGTCGTCGCCGTGTGGTGTCAGTGCAAACTGTTTGAATCTCCCTGGTAACTTTGTTTGCAAATGCGAAGTCGATTTCACAGGAGAACTTTGTGATACACGAATCAATGACTGTGAACCTCACCCTTGTCTCAATGGAGGAACCTGTGTCGATGGCGTGAGATCCTACACATGTAATTGCTTTCCAGGGTTTTATGGCGACAGATGCCAACAAGGTCAAGATGTCAATGAATGCCAGACAGGGCAGGCAGTTTGCGGAGCGGGAGAAGAATGCGTCAATAAATTGGGCAGCTATGATTGTGTATGTCCTGTAGGAACCACAGGCCCTGAATGTTCAATAAATATTGATGACTGTGTAAGTTCACCTTGTCAGCATGGCGCCATTTGTACTGATCTAGTAAATGATTATTCTTGTGAATGTTGTCCTGGTTGGAATGGCAAGAACTGTGACTTATTTGACAAGAAAGATGATGTTTGTGGCTGTGAAAGTGGGACTTGTGACTGCAACAAACAAACACAGACCAGTTTTTGCAAGTGTTTCCAAGGATTTGAAGGGGACAAATGCCAAACAAATTCCACTGCGGCACAAATTCAAAGACAGAGAGCTGAAGCTCTCCAACGAGAGCAGCAACAAGAAAAAGAGAAATTAGAAAAGGAAAAAGCTGTCAGGAACAGAAATATTGGTATCGCAGTGGCATTTTCCATTTTGGGTGTAGTAGCAGGAGCAGTGGTCATGTGGTTTTACATGAAAAGGAAGTCAGCAGGACCCAGACCTCAGAGATTTGGCTTTGATGGTGTTGAGAAAGTCAATTATGCGGGCGGTGAAATGATGTACACAAACCCAGCTTACAGCACAGCTGGCGACGAGGGCGCGGTCACTTTTGAGCCTATGCCAAAGCTCTGA

Transcript

chr14Alt.g29193.t1

TAGTTTGTACGTGTCGAGTTGTTGTGCCAACTAGTATTTCACTGCCCATCAGCTGAAATGATGCAGTCAACCTGTTGGATTAGTTTGGTAACAGTATTAGTTTTGAATTTGTCACATCTCCACGTTAGCCATGCAAAGGGAACCTTGTCAATTCAGTTTGTGGATTACAATAACCCAAGTTCACGAGACAATGCGGGTTATTGCTGCGATTGTTGTAGCTTCTTTGGCTATTGCCCTAATAAATGTGATAACTTCTTCAGACTTTACGCAGTGCCATACCCTGTGAACCATTATGGTGTCTCGAGTGCTTGGAATCACTGGGAGACACATGTTATGAGTGGAGGTGATAGTTTTTCCTTTCCTGGTTATGGTCAGTCTCTTGGTAATCATAACAACCCTGTGACGTATCACTTCAATGGAAGGTGGCAGGGAGCATTTGGTGTTATTTTGAAAGTATGGGATGATGACAGTGGGAATATCTTTGGCATTGGTAGAGCTGATGATCTTGTTGATGAAATTTTTGCAAATGTGCCTAATGTTCCTGCTCAAAAAAATCAACAAAGTGCTGTGGCAAAGAGTGTGACGTTGAATGGTCGAAGATCTACCACCAGAATTTTAGTCCGTGTTTATTGTGATGCTAATTATTATGGCTCGGATTGTAACACATACTGCGTTGGAAGAGATGATGCTGGTGGTCATTACAGATGTGACGAGAACACGGGAAACAAAATCTGTTTGGCTGGATGGATGGGATCCAGCTGTCTTACTGCAATTTGTAAGACTGATTGTGATCCAATCCATGGCTCCTGCACAACACCACACACTTGCATCTGTGCCAGTGGTTGGACTGGGTTAAATTGTGATAGATGCATAAAGAAAGCTGGTTGTTCGGCAGTGCATGGTGACTGTGATCAAGGAAATGACTGTGTTTGTCGCCCTGAGTGGACAGGTCCCAATTGTGATCAAGACTTGAATATGTGCCGTGATTCCCAATTGTGTAAGAACGGTGGGACATGCATTAACACAGACCCTGATCAGCACAAGTGTGATTGTCCTCCTGGTTATACTGGTGCAGATTGTGCAAAAGAAATCAATCTCTGTGCTCCGAGTCTTTGTCAAAACAATGGAACTTGCACCAACTTCAGAACCTACTACACTTGCACTTGTCCAGCTGGATTTGAGGGAGCTAACTGCCAGACAGACATTGATGATTGTAAGCAAGCCAAATGTAGAAATGGAGCAACATGCAAGGATGCAGTAAATGATTATCAGTGTGAATGCGTGGCAGGATTCACAGGGCGCAATTGTGAAATTAACATTGATGAGTGCCAAACAGCTCCTTGTAACAACAATGGAACCTGTATTGATCAAGTGAATGGTTACAGATGCAATTGTCTTCAAGGATTCGGCGATTTCAATTGTTCCACCAACATAGATGACTGTAATTCCACCCTCTGCAGCAATGGAGGCTCCTGTGTGGATGAGGTGAACAACTTCCATTGTGTGTGTCCTGCTGGGTATCTTGGTAGGACTTGCAGCAATGCAACAGATGAATGCTCGACTTTGCCTTGTAAAAATGGTGGAAGTTGCTTGGATTTGCATCGGGATTATAACTGTACATGCCCAGCTGGTTTCACAGGCAAGGATTGTGAAACTAACATCAATGACTGCATATCACCAACACAGTGTAACCAGGGTGTCTGCCGTGATGGTATCGACAATTTCACTTGTGTCTGTCACAGTGGATTCACAGGAGCGCTTTGTGACATAAATATAAACGAGTGTCTTAATCATCAATGTCAAAATGGAGCCTCGTGTAATGATGGCATTGCTCAGTACACCTGCACATGCGCTAATGGATTTGATGGGCCTCTGTGTAGTAACAATATCAATGACTGCGCATCAGCCTTGTGCATTAACAATGCTACATGCATGGATAAGATTGCTGATTACGCCTGTAACTGCAGCCTTGGTTTCACTGGTCGACACTGCGAGATACCCATTGATTACTGTGCTTATCAGGGCTGTAACAACAGTGGCACGTGTGTTAATGAACGAGGCTACAGACGGTGTCTTTGCCCGCCAGGGTTCAATGGCTCCAGTTGTGAAATAACACCTTGCATGATGAATCCATGTTTTAGGGGCACGTGTTATATGCTTTCTGATCTCAGATACAAGTGCCGATGTAGTCAAGGCTTCACCGGAATGCATTGCGATGTTGATATCGATGACTGTGATCCAAGGAACAGCAAATTTATAGTGGAAGATCAAGTAGCTCCTGTTTTTTGTGGGCAACATGGGAAGTGTATCGATGGACTTAATGAATATTCGTGCTTGTGTGACAGAGGGTGGACTGGAAAGGAATGTACAGTTGATATTGATGAGTGCTCTCCAAATCCGTGTAAAAACAATGGAGATTGTGTCCAGACATTCAATGCCAGTTATCTTTGTGGTTGTAAAGCTGGATACACTGGAGTAAACTGCACAGAAAATATTGATGATTGTCAAAATAATTCCTGCCAGGCAAACTCATCTTGTGTTGATAAACTCAATGGTTATGACTGCATCTGTCCTGCTGGTCTCAAGGGAATACATTGTCAGTCAAATTCATCGTGGTGTGAGGGTCCCAGTCCATGTTTCAACGGCAACTGCACTGATGTGGGTGATAACTACACATGCGCTTGCCTCCCAGGTTATACAGGTCAGCGGTGTGAAACAGATATTAACGAGTGTGAATCGTCGTCGCCGTGTGGTGTCAGTGCAAACTGTTTGAATCTCCCTGGTAACTTTGTTTGCAAATGCGAAGTCGATTTCACAGGAGAACTTTGTGATACACGAATCAATGACTGTGAACCTCACCCTTGTCTCAATGGAGGAACCTGTGTCGATGGCGTGAGATCCTACACATGTAATTGCTTTCCAGGGTTTTATGGCGACAGATGCCAACAAGGTCAAGATGTCAATGAATGCCAGACAGGGCAGGCAGTTTGCGGAGCGGGAGAAGAATGCGTCAATAAATTGGGCAGCTATGATTGTGTATGTCCTGTAGGAACCACAGGCCCTGAATGTTCAATAAATATTGATGACTGTGTAAGTTCACCTTGTCAGCATGGCGCCATTTGTACTGATCTAGTAAATGATTATTCTTGTGAATGTTGTCCTGGTTGGAATGGCAAGAACTGTGACTTATTTGACAAGAAAGATGATGTTTGTGGCTGTGAAAGTGGGACTTGTGACTGCAACAAACAAACACAGACCAGTTTTTGCAAGTGTTTCCAAGGATTTGAAGGGGACAAATGCCAAACAAATTCCACTGCGGCACAAATTCAAAGACAGAGAGCTGAAGCTCTCCAACGAGAGCAGCAACAAGAAAAAGAGAAATTAGAAAAGGAAAAAGCTGTCAGGAACAGAAATATTGGTATCGCAGTGGCATTTTCCATTTTGGGTGTAGTAGCAGGAGCAGTGGTCATGTGGTTTTACATGAAAAGGAAGTCAGCAGGACCCAGACCTCAGAGATTTGGCTTTGATGGTGTTGAGAAAGTCAATTATGCGGGCGGTGAAATGATGTACACAAACCCAGCTTACAGCACAGCTGGCGACGAGGGCGCGGTCACTTTTGAGCCTATGCCAAAGCTCTGAAATACCTCAGAAAAATATAACCTACAGTGCAGT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01414 all species →	DSL	Delta serrate ligand	Domain	Interproscan
PF21700 all species →	DL-JAG_EGF-like	Delta-like/Jagged, EGF-like domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001774 all species →	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12916 all species →	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007154 all species →	Biological Process	cell communication	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005112 all species →	Molecular Function	Notch binding	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g29193.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.