Gene detail

Detailed information of g2926.t1 in Acropora digitifera

Genomic Location: chr2Alt:6438388...6454856
NR annotation: XP_029197792.1, cdc42-interacting protein 4 homolog [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr2Alt.g2926.t1

GTTCGAAGTTTGACATTCTAGAAAATATGTTTGATTTCCTCGCGATGTGAAAGGGTATCTTGCTATACTTCAAGATCTTCTGCTCCGTTTTATATATTGATACAAGTGTTGTTTAGGGTGTCAAAATGACTTGGGGGAAAGAGCTTTGGGACCAGTTTGATCTTGTAGCTAATCATACAAATGCTGGGATTGATTTTGTTGAAAAGGTGTCCAAGTTCGTAAAGGAAAGATGCGAAATCGAGACGAGATATGCGAAGGATCTTAGGAGATTAGTGAGATCATTTCTTCCGAAGAAAAAGGAAGAGGAAGAAAAAGTATTTTCGTTCCAAGTGGCATTCACAGGTGTAGTGAAGGAGACTGACGATTTGGCAGGTCAGCATGAGTTGATAGCGGAGACTGTGACGGAAAATGTCTATAAAGAATTACATTCATTACACAATGAATTGAAGGTTGAGAGAAGAAAGCACCTCAGCAATGGGAAAAAAGTTCAAGAGGCCTTGGACCAATCAATCAAAGCATTAGATTCTAGCAAAAAGGCATTCATGAAGGCAAGTGAAGAAGCAGATGTTGCCTTACAAGCTTTTCACAAAGCTGATCAAGACATGGCCAACTCAAGGCTGGTGATCGAAAAGTTCAAGAATGTATCGGTTGAAAAAGGGCAAGCATGTGAAAGAGCTCGTGAAGAATATAGAAATCAACTTGAAGAGACAAACAGTAAACAAATTTTGCATTACAGTAATGAGATGCCAGCAATATTTGATGAGCTTCAGAAGATGGATGAACGTAGAATACAGAGAACTGGGCAGCTTCTGTCAGAGTATTCTAATTTAGAGACAAAAGTAATGCCGATTATACAGAAATGCTTGGATAACATTAAAGGCTTTGGAAATTCTGTCAATGGACCAGAGGATAGTAAAATGTTGAGTGAGCAAAATAAGACAGGTATTGAACCACCTAGTGATTTTCAGTTTGAAGAGTATGGCAAGGCACAAACATTGAACAAGCCGTCCCAAGGTTTGTCAAAAGAAAAAAAGAAAAAAGGATTTGGAAATTTACTAAGAAAACAGAAAAAGCCTGCTGATGGAGATTTAGACGGTAAAGATCAAACCCTATCGCCGGGACAAAAGCTTCGGTCATGTAAGAAGAAGGTTCAACAGCTAGAGTCACAAATAGCACAACTTAAAAATTCCAGAGAGGGTATGGAGAAGATGGTTGATGTCTACAGACAAAATCCATCACTCGGTGACCCAAACACAATTGAGCAACAACTCAGCGAAAATGCAAGAGAACTGGATGCCTTGAATGAAGATCTTCACAAATATCAGTGTTATCTATCTGCTCTCGAAAATAAGTCAGCACCACCTGCGCCTGAAAAGTACTCGGTAGTCAACCGATCCCAGCCACAGCCAGCACCTGCTGCAGATGTGCCTGGTGGGACACCTCCCCCACCAGCTCCAGCCCCTCCCCCAGCCCCGGCCATGCTGGTTCCACCTGTGGAGGAACCAGAGGATGAGTGGGGTGACGAGGATGATCTGCAGTGTCAAGTTATCTATGATTTCCAAGCTTCCAATGACGGTGAGCTGTCAGTCAGTGAAGGTGAGGTACTAATTGTCCTAGAGCAAGACCTCGATAATAGTGGTTGGACAAAAGTGTTGAAAGGTGACGACGAAGGATATGTCCCATCTACTTATATTGAGCTGCAATAGACACAAGATAGTTGCTTGTGATTTCTGATCAGTCTTCGCCAAAAATGACTCAAGATGAATAAGATGGAAGTAATTATCTACCCTCACGATCATTTTGAAACGAAAATATGGAATATGTTGCAAGTAATTTAGGGGTCATTGTTCCCTAAAATGGGTAATTCCTGCTGTGTAAGATGCACTTATGCAGACCGTTACTGTACAGTGTATGATGTGACAGCTGAAATTTTGTGCATGACAAATTCTCGAAGTTGGGCCTCAACCAAATGAATGGTTGAGCAAGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DCZ7	Formin-binding protein 1-like OS=Xenopus laevis OX=8355 GN=fnbp1l PE=1 SV=1
Q6GUF4	Formin-binding protein 1-like OS=Xenopus tropicalis OX=8364 GN=fnbp1l PE=1 SV=1
Q2HWF0	Formin-binding protein 1-like OS=Rattus norvegicus OX=10116 GN=Fnbp1l PE=1 SV=2

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR011072 all species →	Domain	HR1 rho-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15735 all species →	FCH AND DOUBLE SH3 DOMAINS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20121	FNBP1; formin-binding protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.