Gene detail

Detailed information of g2926.t1 in Montipora capitata

Genomic Location: Sc0000047:43098...67869
NR annotation: XP_029190447.2, A disintegrin and metalloproteinase with thrombospondin motifs 18-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2926.t1

atgtttgaacatattctattatatgtgaaatcggcagaactgcttgcgctacccaaccacgaaaacaggaagaaagcgactcttcaccatcgaatgacgaaacgggaaatcgcaaagtattttggagtgaactcactcgctgaagtgccagagtacgaagtcgtttcgccattccaagcagacgaaacagggaaattcgttacccatatccttcaaaaacgcagccgtaccaaaagaacaacatccaaacaaagttcctggttttataagatcaatgcctttggtttaacactccatttaaacgtcacaaaaggccgacacatagttgcaccaggaaccgtcgtggagactacacacgaaaacggaagtacaacgtacagtgcacccccaaagaatactttctatagtggacatgtggtctctcatcctgcttcctcagttgcaattagcaaccaggatggactgactggcatgattaacttactgagtcacgccctctttatacatcctcttccaagtcatctcgcacaggattatgggtcagcaaacactgctcaatctcatgtaatctataaacgctcattgaaagatatcgttgggcagacaagtgacgtcgtttcggaagacatgcccgataatgaatgtcccaaaagggacctggaaacaaagacaattacacagtcatcaacaaatcctgaagggtcatcttctcacaaacatttggaggttgccatggtagcagatgacttggttgtgaagaagcatggggagcaaaacctgagcatgaagttgatgattttagcacacttggtcaataacatgtttcacgatgaaagtgttggagacaagaagcttgctttagttgtggtcaaaatagttatcaagaaagatgggtttggttatagctcctcagccaattctcgagaaagactgaggcatcttgcagactgggcgatgaataaaaggagctcactttgggaagataattcaagttaccccgacctcatcgtcctgctaacagggaatggatttggagggctagcccttatgggctcaacttgtgccacatgttttggaaggtgtgttagcaatgacattgggcttgcgtccgcaatcatcatcgcccacgaagcggctcacacgtttggccttggacacgatggaagggatggggggtgtaataacggatatatcatgtcgagtgcagtgagtgatggtacaaatgctttcaaatggtcagattgcagcagaagacgcattcaacaattcttagccggctcgggttcttcttgcttagatgataatcccaacaattatttacgcgaaccaagcatcttccacaaaaaattgcctggacaaatcgtgaatgctactctacaatgcaagctgcagtatggtgtcaaatactttcagtgcgggcagagaatagctgactgtggtttattgttctgtacaaatgacggtcacttttgtaagacttttggggctcctccagtcgatggtactcgctgtggtgacagacactggtgcatcaaaggtgaatgtgttgacgatggttctcccatgattgacggtgaatggagtgattggcaggactatcagccgtgcagccgaacgtgtggcgttggcgtgacatggaggacaagaacatgcacgaatcctgtgccacaaaatggagggaaaaaatgcgaaggatacggaaagggattatggaaaatatgcaactctcagccttgccctgatgggtctgtagactatcgccttagtcaatgtcgcgcatttcaacacacaacagcagtaaggtggacagcagatgcttgccagctgtcttgccaacggggaaactgggtaacaccacgtggcacagttaaggacggtacatcatgtagcagtaatccgaaagttcacgatgtctgcattgagggaatctgcaagcccgttggctgtgatttcaagctgcaatctggactcaagtatgaccgctgtgctgtttgcggtggaaacagctctacatgtagcttgatccacggaacctacaccaaaaactaccacggctttggaccaaataatcctgaccaaattgtcaccattcccagtggttcaaccaacatttttgttcacgtgaaagaaaaaactaggaaccttcttggggtaaaagatgacaagaatcgttgggtttacagagtgggatatacatggagcactgtagtactggcagccggcactcgagtatcttacgaccatagagcgtatttttggaaagataaagttgacattcctggaccgacgcagcaagaactccaaatcaaatacgtgtatattagcggagcaaatccaggagtggaatatcgcttcttttcaccacaaaagagtgaagtggatcctggtgattttcactggaagattggggcctgggacttgtgttctgaagattgtgctggaggttaccagcgaagagtcgttgagtgcgtgcgtaaagatgatgaaagctacgcgaatgacaaaatgtgccttaagactcgagctaaacctacaacgcagagggtttgtaacatacaaccatgtgcagctgagtggtacgaatcgggttggcggccttgctcccagacttgtggcaaggggattcagctcagacagatcgtgtgcagacggaagatcagccaagatcagtatgacacagttgaagactcgtcatgtgacatagagaaaccaacggggattctgcagcaagagtgcaacaaggtgtcatgtcctgctgagtggaaagcattagcttggagcgagtgttctcggtcgtgtgaaggtgggaatatgacacggactttaaggtgcatgaaacttaacgcgcatggcaaactggtctcggtctcaaagcaccaatgcatacacgcagtcaaaccgatcacaagcgagcagtgcaacacggatatcagctgcccacgttccatagaaggctcggatggtaaacactttaatcccctgggttgttacaaagactccaacagcaatcgcgctctgccagaatttgtagcaagttttcgcggaaaaatcgactggtcaaggatggaaaaaacagttgacaaatgcgcacatcaagtagttgaaaaaaattcatcctacaaggtatttggtatccagttctacggagagtgttggtcagggactgggggagataaaacatatggtgaatacggttggtctcgcaactgttggcaaggcgtgggtggaccacacaccaattttgtctatgaatttgttgacgacaagaagaatccatga

Transcript

g2926.t1

ATGTTTGAACATATTCTATTATATGTGAAATCGGCAGAACTGCTTGCGCTACCCAACCACGAAAACAGGAAGAAAGCGACTCTTCACCATCGAATGACGAAACGGGAAATCGCAAAGTATTTTGGAGTGAACTCACTCGCTGAAGTGCCAGAGTACGAAGTCGTTTCGCCATTCCAAGCAGACGAAACAGGGAAATTCGTTACCCATATCCTTCAAAAACGCAGCCGTACCAAAAGAACAACATCCAAACAAAGTTCCTGGTTTTATAAGATCAATGCCTTTGGTTTAACACTCCATTTAAACGTCACAAAAGGCCGACACATAGTTGCACCAGGAACCGTCGTGGAGACTACACACGAAAACGGAAGTACAACGTACAGTGCACCCCCAAAGAATACTTTCTATAGTGGACATGTGGTCTCTCATCCTGCTTCCTCAGTTGCAATTAGCAACCAGGATGGACTGACTGGCATGATTAACTTACTGAGTCACGCCCTCTTTATACATCCTCTTCCAAGTCATCTCGCACAGGATTATGGGTCAGCAAACACTGCTCAATCTCATGTAATCTATAAACGCTCATTGAAAGATATCGTTGGGCAGACAAGTGACGTCGTTTCGGAAGACATGCCCGATAATGAATGTCCCAAAAGGGACCTGGAAACAAAGACAATTACACAGTCATCAACAAATCCTGAAGGGTCATCTTCTCACAAACATTTGGAGGTTGCCATGGTAGCAGATGACTTGGTTGTGAAGAAGCATGGGGAGCAAAACCTGAGCATGAAGTTGATGATTTTAGCACACTTGGTCAATAACATGTTTCACGATGAAAGTGTTGGAGACAAGAAGCTTGCTTTAGTTGTGGTCAAAATAGTTATCAAGAAAGATGGGTTTGGTTATAGCTCCTCAGCCAATTCTCGAGAAAGACTGAGGCATCTTGCAGACTGGGCGATGAATAAAAGGAGCTCACTTTGGGAAGATAATTCAAGTTACCCCGACCTCATCGTCCTGCTAACAGGGAATGGATTTGGAGGGCTAGCCCTTATGGGCTCAACTTGTGCCACATGTTTTGGAAGGTGTGTTAGCAATGACATTGGGCTTGCGTCCGCAATCATCATCGCCCACGAAGCGGCTCACACGTTTGGCCTTGGACACGATGGAAGGGATGGGGGGTGTAATAACGGATATATCATGTCGAGTGCAGTGAGTGATGGTACAAATGCTTTCAAATGGTCAGATTGCAGCAGAAGACGCATTCAACAATTCTTAGCCGGCTCGGGTTCTTCTTGCTTAGATGATAATCCCAACAATTATTTACGCGAACCAAGCATCTTCCACAAAAAATTGCCTGGACAAATCGTGAATGCTACTCTACAATGCAAGCTGCAGTATGGTGTCAAATACTTTCAGTGCGGGCAGAGAATAGCTGACTGTGGTTTATTGTTCTGTACAAATGACGGTCACTTTTGTAAGACTTTTGGGGCTCCTCCAGTCGATGGTACTCGCTGTGGTGACAGACACTGGTGCATCAAAGGTGAATGTGTTGACGATGGTTCTCCCATGATTGACGGTGAATGGAGTGATTGGCAGGACTATCAGCCGTGCAGCCGAACGTGTGGCGTTGGCGTGACATGGAGGACAAGAACATGCACGAATCCTGTGCCACAAAATGGAGGGAAAAAATGCGAAGGATACGGAAAGGGATTATGGAAAATATGCAACTCTCAGCCTTGCCCTGATGGGTCTGTAGACTATCGCCTTAGTCAATGTCGCGCATTTCAACACACAACAGCAGTAAGGTGGACAGCAGATGCTTGCCAGCTGTCTTGCCAACGGGGAAACTGGGTAACACCACGTGGCACAGTTAAGGACGGTACATCATGTAGCAGTAATCCGAAAGTTCACGATGTCTGCATTGAGGGAATCTGCAAGCCCGTTGGCTGTGATTTCAAGCTGCAATCTGGACTCAAGTATGACCGCTGTGCTGTTTGCGGTGGAAACAGCTCTACATGTAGCTTGATCCACGGAACCTACACCAAAAACTACCACGGCTTTGGACCAAATAATCCTGACCAAATTGTCACCATTCCCAGTGGTTCAACCAACATTTTTGTTCACGTGAAAGAAAAAACTAGGAACCTTCTTGGGGTAAAAGATGACAAGAATCGTTGGGTTTACAGAGTGGGATATACATGGAGCACTGTAGTACTGGCAGCCGGCACTCGAGTATCTTACGACCATAGAGCGTATTTTTGGAAAGATAAAGTTGACATTCCTGGACCGACGCAGCAAGAACTCCAAATCAAATACGTGTATATTAGCGGAGCAAATCCAGGAGTGGAATATcgcttcttttcaccacaaaagAGTGAAGTGGATCCTGGTGATTTTCACTGGAAGATTGGGGCCTGGGACTTGTGTTCTGAAGATTGTGCTGGAGGTTACCAGCGAAGAGTCGTTGAGTGCGTGCGTAAAGATGATGAAAGCTACGCGAATGACAAAATGTGCCTTAAGACTCGAGCTAAACCTACAACGCAGAGGGTTTGTAACATACAACCATGTGCAGCTGAGTGGTACGAATCGGGTTGGCGGCCTTGCTCCCAGACTTGTGGCAAGGGGATTCAGCTCAGACAGATCGTGTGCAGACGGAAGATCAGCCAAGATCAGTATGACACAGTTGAAGACTCGTCATGTGACATAGAGAAACCAACGGGGATTCTGCAGCAAGAGTGCAACAAGGTGTCATGTCCTGCTGAGTGGAAAGCATTAGCTTGGAGCGAGTGTTCTCGGTCGTGTGAAGGTGGGAATATGACACGGACTTTAAGGTGCATGAAACTTAACGCGCATGGCAAACTGGTCTCGGTCTCAAAGCACCAATGCATACACGCAGTCAAACCGATCACAAGCGAGCAGTGCAACACGGATATCAGCTGCCCACGTTCCATAGAAGGCTCGGATGGTAAACACTTTAATCCCCTGGGTTGTTACAAAGACTCCAACAGCAATCGCGCTCTGCCAGAATTTGTAGCAAGTTTTCGCGGAAAAATCGACTGGTCAAGGAtggaaaaaacagttgacaaaTGCGCACATCAAGtagttgaaaaaaattcatccTACAAGGTATTTGGTATCCAGTTCTACGGAGAGTGTTGGTCAGGGACTGGGGGAGATAAAACATATGGTGAATACGGTTGGTCTCGCAACTGTTGGCAAGGCGTGGGTGGACCACACACCAATTTTGTCTATGAATTTGTTGACGACAAGAAGAATCCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TE57	A disintegrin and metalloproteinase with thrombospondin motifs 16 OS=Homo sapiens OX=9606 GN=ADAMTS16 PE=1 SV=3
Q4VC17	A disintegrin and metalloproteinase with thrombospondin motifs 18 OS=Mus musculus OX=10090 GN=Adamts18 PE=2 SV=2
Q9UKP5	A disintegrin and metalloproteinase with thrombospondin motifs 6 OS=Homo sapiens OX=9606 GN=ADAMTS6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19236 all species →	ADAMTS_CR_3	ADAMTS cysteine-rich domain	Domain	Interproscan
PF01562 all species →	Pep_M12B_propep	Reprolysin family propeptide	Family	Interproscan
PF17771 all species →	ADAMTS_CR_2	ADAMTS cysteine-rich domain 2	Domain	Interproscan
PF05986 all species →	ADAMTS_spacer1	ADAM-TS Spacer 1	Domain	Interproscan
PF13688 all species →	Reprolysin_5	Metallo-peptidase family M12	Family	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF19030 all species →	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR050439 all species →	Family	ADAMTS and ADAMTS-like	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR045371 all species →	Domain	ADAMTS/ADAMTS-like, cysteine-rich domain 3	Interproscan
IPR002870 all species →	Domain	Peptidase M12B, propeptide	Interproscan
IPR006586 all species →	Domain	ADAM, cysteine-rich domain	Interproscan
IPR013273 all species →	Family	ADAMTS/ADAMTS-like	Interproscan
IPR041645 all species →	Domain	ADAMTS, cysteine-rich domain 2	Interproscan
IPR010294 all species →	Domain	ADAMTS/ADAMTS-like, Spacer 1	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723 all species →	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08632	ADAMTS18; a disintegrin and metalloproteinase with thrombospondin motifs 18	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2926.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

31TPM > 0

3Conditions

2.0Max TPM

0.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	14	0.58	2.01
whole organisms · low pH treatment	15	9	0.51	1.42
whole organisms · extra low pH treatment pH treatment	12	8	0.61	1.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.01
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	1.72
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	1.17
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	1.05
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	0.94
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	0.89
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.77
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.69
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	0.67
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	0.58
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	0.52
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	0.46
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	0.39
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	0.33
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	0.00
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	0.00
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	0.00
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	1.42
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	1.39
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.11
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	0.90
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	0.82
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	0.57
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	0.56
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.47
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	0.39
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	0.00
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	0.00
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.00
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.00
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.44
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	1.30
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	1.26
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.93
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	0.87
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.74
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	0.54
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	0.23
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.