Gene detail

Detailed information of g293.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: NMM44981.1, molybdopterin-synthase adenylyltransferase MoeB [Pacificispira spongiicola]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q72J02	Sulfur carrier protein adenylyltransferase OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=ttuC PE=1 SV=1
D4GSF3	SAMP-activating enzyme E1 OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) OX=309800 GN=ubaA PE=1 SV=1
P9WMN6	Probable adenylyltransferase/sulfurtransferase MoeZ OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=moeZ PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000024 (this species only)
Orthogroup (gene family)	OG0001359 (this species only)
Orthogroup (gene family)	OG0002722 (this species only)
Orthogroup (gene family)	OG0002901 (this species only)
Orthogroup (gene family)	OG0003233 (this species only)
Orthogroup (gene family)	OG0005096 (this species only)
Orthogroup (gene family)	OG0005199 (this species only)
Orthogroup (gene family)	OG0007343 (this species only)
Orthogroup (gene family)	OG0014420 (this species only)
Orthogroup (gene family)	OG0021794 (this species only)
Orthogroup (gene family)	OG0025639 (this species only)
Orthogroup (gene family)	OG0027655 (this species only)
Orthogroup (gene family)	OG0170694 (this species only)
Orthogroup (gene family)	OG0171840 (this species only)
Orthogroup (gene family)	OG0173152 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13456 all species →	RVT_3	Reverse transcriptase-like	Domain	Interproscan
PF00899 all species →	ThiF	ThiF family	Domain	Interproscan
PF00589 all species →	Phage_integrase	Phage integrase family	Family	Interproscan
PF17820 all species →	PDZ_6	PDZ domain	Domain	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF05544 all species →	Pro_racemase	Proline racemase	Family	Interproscan
PF14580 all species →	LRR_9	Leucine-rich repeat	Repeat	Interproscan
PF04551 all species →	GcpE	GcpE protein	Family	Interproscan
PF00164 all species →	Ribosom_S12_S23	Ribosomal protein S12/S23	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR002156 all species →	Domain	Ribonuclease H domain	Interproscan
IPR000594 all species →	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR045886 all species →	Family	ThiF/MoeB/HesA family	Interproscan
IPR035985 all species →	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR002104 all species →	Domain	Integrase, catalytic domain	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR050090 all species →	Family	Bacterial tyrosine recombinase XerC/XerD complex	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR052122 all species →	Family	Intracellular Trafficking and Signaling Regulator	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR041489 all species →	Domain	PDZ domain 6	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR051625 all species →	Family	Diverse Signaling and Regulatory Domain-Containing Protein	Interproscan
IPR008794 all species →	Family	Proline racemase family	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003603 all species →	Domain	U2A'/phosphoprotein 32 family A, C-terminal	Interproscan
IPR004588 all species →	Family	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type	Interproscan
IPR045854 all species →	Homologous_superfamily	Nitrite and sulphite reductase 4Fe-4S domain-like superfamily	Interproscan
IPR011005 all species →	Homologous_superfamily	Dihydropteroate synthase-like superfamily	Interproscan
IPR016425 all species →	Family	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial	Interproscan
IPR005679 all species →	Family	Ribosomal protein uS12, bacterial-type	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR006032 all species →	Family	Small ribosomal subunit protein uS12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10953 all species →	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan
PTHR30349 all species →	PHAGE INTEGRASE-RELATED	Interproscan
PTHR15963 all species →	GENERAL RECEPTOR FOR PHOSPHOINOSITIDES 1-ASSOCIATED SCAFFOLD PROTEIN-RELATED	Interproscan
PTHR22872 all species →	BTK-BINDING PROTEIN-RELATED	Interproscan
PTHR33442 all species →	TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE	Interproscan
PTHR10552 all species →	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	Interproscan
PTHR30454 all species →	4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE	Interproscan
PTHR11652 all species →	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0004792 all species →	Molecular Function	thiosulfate sulfurtransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0008641 all species →	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0047580 all species →	Molecular Function	4-hydroxyproline epimerase activity	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0030620 all species →	Molecular Function	U2 snRNA binding	Interproscan
GO:0016114 all species →	Biological Process	terpenoid biosynthetic process	Interproscan
GO:0019288 all species →	Biological Process	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	Interproscan
GO:0046429 all species →	Molecular Function	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin)	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0008299 all species →	Biological Process	isoprenoid biosynthetic process	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02950	RP-S12, MRPS12, rpsL; small subunit ribosomal protein S12	-	Ribosome	ko03011	deepkoala
K03526	gcpE, ispG; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	EC:1.17.7.1 EC:1.17.7.3	Terpenoid backbone biosynthesis	ko00900	deepkoala
K21029	moeB; molybdopterin-synthase adenylyltransferase	EC:2.7.7.80	Sulfur relay system	ko04122	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.