Gene detail

Detailed information of g29318.t2 in Acropora digitifera

Genomic Location: chr14Alt:2707226...2725250
NR annotation: XP_029203062.2, LOW QUALITY PROTEIN: neutral alpha-glucosidase AB-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g29318.t2

ATGGCGACTTTACACGCTTCGAGTGGAATAATCTCACTATTGCTGGTATGGATAATGACTCAAATAGACGCTGTTGACAAAGGCCTCTTCAAGAAATGTGAAGACAGTAGTTTTTGCCGACTTAACAGAGCCATTCAGCCTGGAGAATCACCGTATTCAGTTATCAAAGACTCCATAGTTTTTTCAGATTCCTCGATTGATGTGAATATTCTAAATACGAAAAGAAATGTGACACTTAAACTTAAAGTTCAGACTTTAAAAAAGAACTCAGTTAGGTTTTCAATAAATGAAGCAAATCCCATTAGAGAAAGATATCAAGTCAAAGATGTTTTAGTTCAGGAACCTGAAACTGTAAGTTATCAAATACTCAAGCAAGATGACGAAAGCGTTCACATTGGCTTCGGTAACAATAGTGTCGTATTAACAAACGATCCATTCCGACTTGATTTCCTTGTCAACAAGGAAGTTGTTGTGTCTGTTAACGCTAGAGGACTCATGAACTTTGAAGAGTACAGAGAGAAAAGGAAGGTCCCTGTGAAAGTTGACGAAGGTGAAGGCCACCCTCCTGGTGAGAACGAAGAAGAAAAACCAGAAAAGGAGGCTGAGGAGGGTGAAGGTGTTGAAAAGAAGGAAGAGGTTGTAGAAGAAGAGAATTGGGAGGAGAATTTTAAAGAACACAAAGATACCAGACCAAGAGGTCCTTGTTCTGTTGGATTGGATATTTCATTCCCTGGATTTGAACATGTTTACGGAATTCCTGAACATGCAGACAGTTTGGCACTCAAGACAACAGTTGGTTCTGAGCCATACCGTTTGTATAACCTGGATGTGTTTGAGTATGAGCTGGATTCAAGAATGGCTCTCTACGGCAGTATTCCTGTCATGCTTGCTCACAGTGTTGCACAGACGGTGGGTGTGTTCTGGATGAATGCAGCTGAAACTTGGGTGGACATAAGCTCGTCCAATGCAAGAAAGTCTATGTTAAATTCACTGATGTCGTTTTTCAAGGAAGCTGAAGAGGTCCCGCAAGTTGAAACTCATTGGATATCAGAGAGTGGCATTATTGATGTGTTTGTCATGCTTGGTCCAAAACCACATGATGTGTTCCAGGAATATGCCTCGTTTACTGGAACTACAGCTTTACCACCTCTGTTTGGAATCTCCTATCATCAGAGTCGATGGAACTACAATGACGAAGAGGACGTCGAAAATGTGGACAGTAGCTTTGACGAGCATGATATTCCTTATGACGTCTTGTGGCTGGATATTGAGCACACCGATGGCAAGAAATATATGACTTGGGACAAGCTCAAATTTCCCTCTCCGGAACAGATGCAGAAAAATCTGGCTGCCAAAGGTCGTAAGATGGTCACCATTATAGACCCTCACATTAAACGTGAAGGAGGCTATCACATTCACGAGGCAACAACAAAGTTGGGATATTACGTGAAGAACAAAGATGGCGGAGAGTACGATAACTGGTGTTGGCCAGGAAGTTCGTCCTGGATCGATTTTACCAATCCAGAAATTCGCAAGTGGTGGGCTGGGAAGTTTGCCTTAAGTGAATATCCGGGCTCGACAGAAACTCTCTTTACTTGGAATGACATGAACGAGCCTTCGGTTTTCCACGGCCCGGAAGTTACAATGCACAAAGATGCATTGCATTATGCGGATTGGGAGCATCGAGATATCCACAACGTGTACGGTTTTTATCAGCACATGGCCACAGTCCAGGGACTTATTGATCGCTCGGGGGGTAGCCACAGGCCTTTTGTCCTTTCAAGAGCATTTTTCGCGGGCACTCAAAGGCACGGTCCCATTTGGACGGGCGATAACATGGCGTCCTGGGATCACCTCAAGGCTTCCCTTCCCATGATCCTCTCGCTGAACCTGGTTGGTTTGCCGTTTTCAGGAGCCGACGTTGGTGGTTTCTTTAACAACCCTGATCCGGAATTGTTGGTGAGATGGTACCAGGCTGCAGCTTTCATGCCATTTTACCGCGCGCATGCCCATTTGGACACCAAGCGACGTGAACCTTGGTTGTTTGAAGCAAGTTACAAGAACATCATCAGAAATGCCGTCCGCTTGAGATATACCTTGTTACCTTACTGGTACACCCTGTTCTACCACGCCTCTGACACAGGAACACCAATCGTAAGGCCCTTGTGGGTCGAGTTCCCTGAAGAGAAAAATACTTTTTCGATGGAAGACCAATTTTTACTTGGAGAAAATCTTCTTGTAAAACCAGTTACTACTCAAGGACAGAGCACCATTGATGTTTATCTGCCGGGAAAAGACGAGTACTGGTATGATCTCAGCGACTACAAGATTTACCGAGGGGAAAGCACAATTTACGTTTCAACACCATTAGATAAGATCCCTTTGTTTCAACGAGGTGGGAGTGTCATAGCAACAAAACAGCGGGTTCGTCGTTGCAGTGCTTTGATGCACAGGGATCCTTACACCTTAACTATAGCCTTGAATCCCAAGGCCCAAGCAGAAGGAGATCTCTACGTGGACGATGGCTACACGTTGGACTACAAGAGTGGAGCCTACATTTACATGAACTTTACATTTCAGGGCGGGCGACTGATGGCAAGGAAAGCAAACCCAGGTTCTCAATACAAATCTGAGTCGTGGATTGAGCGTATAGTTATTTTAGGAATAAGCAACTCTCCCAAAGGAATCCTCCTGACTGCTGATGGTGGCGAGAGCAGACGCATGGAATTCAGACACGATGCTAACACAAACACAATGACCATAAAGAAACCAGCAGTTAACATTGGCCAAGAATGGACCATATCAATGCACGCTTAG

Transcript

chr14Alt.g29318.t2

AGGCCGATTTCGATTTGCTACTCCTGGATCAATGGCGACTTTACACGCTTCGAGTGGAATAATCTCACTATTGCTGGTATGGATAATGACTCAAATAGACGCTGTTGACAAAGGCCTCTTCAAGAAATGTGAAGACAGTAGTTTTTGCCGACTTAACAGAGCCATTCAGCCTGGAGAATCACCGTATTCAGTTATCAAAGACTCCATAGTTTTTTCAGATTCCTCGATTGATGTGAATATTCTAAATACGAAAAGAAATGTGACACTTAAACTTAAAGTTCAGACTTTAAAAAAGAACTCAGTTAGGTTTTCAATAAATGAAGCAAATCCCATTAGAGAAAGATATCAAGTCAAAGATGTTTTAGTTCAGGAACCTGAAACTGTAAGTTATCAAATACTCAAGCAAGATGACGAAAGCGTTCACATTGGCTTCGGTAACAATAGTGTCGTATTAACAAACGATCCATTCCGACTTGATTTCCTTGTCAACAAGGAAGTTGTTGTGTCTGTTAACGCTAGAGGACTCATGAACTTTGAAGAGTACAGAGAGAAAAGGAAGGTCCCTGTGAAAGTTGACGAAGGTGAAGGCCACCCTCCTGGTGAGAACGAAGAAGAAAAACCAGAAAAGGAGGCTGAGGAGGGTGAAGGTGTTGAAAAGAAGGAAGAGGTTGTAGAAGAAGAGAATTGGGAGGAGAATTTTAAAGAACACAAAGATACCAGACCAAGAGGTCCTTGTTCTGTTGGATTGGATATTTCATTCCCTGGATTTGAACATGTTTACGGAATTCCTGAACATGCAGACAGTTTGGCACTCAAGACAACAGTTGGTTCTGAGCCATACCGTTTGTATAACCTGGATGTGTTTGAGTATGAGCTGGATTCAAGAATGGCTCTCTACGGCAGTATTCCTGTCATGCTTGCTCACAGTGTTGCACAGACGGTGGGTGTGTTCTGGATGAATGCAGCTGAAACTTGGGTGGACATAAGCTCGTCCAATGCAAGAAAGTCTATGTTAAATTCACTGATGTCGTTTTTCAAGGAAGCTGAAGAGGTCCCGCAAGTTGAAACTCATTGGATATCAGAGAGTGGCATTATTGATGTGTTTGTCATGCTTGGTCCAAAACCACATGATGTGTTCCAGGAATATGCCTCGTTTACTGGAACTACAGCTTTACCACCTCTGTTTGGAATCTCCTATCATCAGAGTCGATGGAACTACAATGACGAAGAGGACGTCGAAAATGTGGACAGTAGCTTTGACGAGCATGATATTCCTTATGACGTCTTGTGGCTGGATATTGAGCACACCGATGGCAAGAAATATATGACTTGGGACAAGCTCAAATTTCCCTCTCCGGAACAGATGCAGAAAAATCTGGCTGCCAAAGGTCGTAAGATGGTCACCATTATAGACCCTCACATTAAACGTGAAGGAGGCTATCACATTCACGAGGCAACAACAAAGTTGGGATATTACGTGAAGAACAAAGATGGCGGAGAGTACGATAACTGGTGTTGGCCAGGAAGTTCGTCCTGGATCGATTTTACCAATCCAGAAATTCGCAAGTGGTGGGCTGGGAAGTTTGCCTTAAGTGAATATCCGGGCTCGACAGAAACTCTCTTTACTTGGAATGACATGAACGAGCCTTCGGTTTTCCACGGCCCGGAAGTTACAATGCACAAAGATGCATTGCATTATGCGGATTGGGAGCATCGAGATATCCACAACGTGTACGGTTTTTATCAGCACATGGCCACAGTCCAGGGACTTATTGATCGCTCGGGGGGTAGCCACAGGCCTTTTGTCCTTTCAAGAGCATTTTTCGCGGGCACTCAAAGGCACGGTCCCATTTGGACGGGCGATAACATGGCGTCCTGGGATCACCTCAAGGCTTCCCTTCCCATGATCCTCTCGCTGAACCTGGTTGGTTTGCCGTTTTCAGGAGCCGACGTTGGTGGTTTCTTTAACAACCCTGATCCGGAATTGTTGGTGAGATGGTACCAGGCTGCAGCTTTCATGCCATTTTACCGCGCGCATGCCCATTTGGACACCAAGCGACGTGAACCTTGGTTGTTTGAAGCAAGTTACAAGAACATCATCAGAAATGCCGTCCGCTTGAGATATACCTTGTTACCTTACTGGTACACCCTGTTCTACCACGCCTCTGACACAGGAACACCAATCGTAAGGCCCTTGTGGGTCGAGTTCCCTGAAGAGAAAAATACTTTTTCGATGGAAGACCAATTTTTACTTGGAGAAAATCTTCTTGTAAAACCAGTTACTACTCAAGGACAGAGCACCATTGATGTTTATCTGCCGGGAAAAGACGAGTACTGGTATGATCTCAGCGACTACAAGATTTACCGAGGGGAAAGCACAATTTACGTTTCAACACCATTAGATAAGATCCCTTTGTTTCAACGAGGTGGGAGTGTCATAGCAACAAAACAGCGGGTTCGTCGTTGCAGTGCTTTGATGCACAGGGATCCTTACACCTTAACTATAGCCTTGAATCCCAAGGCCCAAGCAGAAGGAGATCTCTACGTGGACGATGGCTACACGTTGGACTACAAGAGTGGAGCCTACATTTACATGAACTTTACATTTCAGGGCGGGCGACTGATGGCAAGGAAAGCAAACCCAGGTTCTCAATACAAATCTGAGTCGTGGATTGAGCGTATAGTTATTTTAGGAATAAGCAACTCTCCCAAAGGAATCCTCCTGACTGCTGATGGTGGCGAGAGCAGACGCATGGAATTCAGACACGATGCTAACACAAACACAATGACCATAAAGAAACCAGCAGTTAACATTGGCCAAGAATGGACCATATCAATGCACGCTTAGCCAAGGGGATCTTTTTGTCATGAAATGTTCTTTTTTACGTTATAAAATGATGTTTTTTCAGGGGTTAGGCTGATTTCACTATCCAGCTGAGAAACGAAACGGGAAGGCGTCTATAATTCTCAGCACTGTAGCAAACTTCTAATTGACCACGATTTTGTAACAACTCTTTGAGTAAAGTGGAATAAATTTATTTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BHN3	Neutral alpha-glucosidase AB OS=Mus musculus OX=10090 GN=Ganab PE=1 SV=1
P79403	Neutral alpha-glucosidase AB OS=Sus scrofa OX=9823 GN=GANAB PE=1 SV=1
Q14697	Neutral alpha-glucosidase AB OS=Homo sapiens OX=9606 GN=GANAB PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21365 all species →	Glyco_hydro_31_3rd	Glycosyl hydrolase family 31 C-terminal domain	Domain	Interproscan
PF01055 all species →	Glyco_hydro_31_2nd	Glycosyl hydrolases family 31 TIM-barrel domain	Domain	Interproscan
PF13802 all species →	Gal_mutarotas_2	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR048395 all species →	Domain	Glycosyl hydrolase family 31, C-terminal domain	Interproscan
IPR000322 all species →	Domain	Glycoside hydrolase family 31, TIM barrel domain	Interproscan
IPR025887 all species →	Domain	Glycoside hydrolase family 31, N-terminal domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22762 all species →	ALPHA-GLUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0006491 all species →	Biological Process	N-glycan processing	Interproscan
GO:0090599 all species →	Molecular Function	alpha-glucosidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05546	GANAB; mannosyl-oligosaccharide alpha-1,3-glucosidase	EC:3.2.1.207	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g29318.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.