Gene detail

Detailed information of g29331.t1 in Acropora digitifera

Genomic Location: chr14Alt:2920173...2926095
NR annotation: XP_029203080.1, glycine N-methyltransferase-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13255	Glycine N-methyltransferase OS=Rattus norvegicus OX=10116 GN=Gnmt PE=1 SV=2
Q29555	Glycine N-methyltransferase OS=Sus scrofa OX=9823 GN=GNMT PE=1 SV=2
Q14749	Glycine N-methyltransferase OS=Homo sapiens OX=9606 GN=GNMT PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13847 all species →	Methyltransf_31	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025714 all species →	Domain	Methyltransferase domain	Interproscan
IPR014369 all species →	Family	Glycine/Sarcosine N-methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16458 all species →	GLYCINE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006111 all species →	Biological Process	regulation of gluconeogenesis	Interproscan
GO:0006730 all species →	Biological Process	one-carbon metabolic process	Interproscan
GO:0016594 all species →	Molecular Function	glycine binding	Interproscan
GO:0017174 all species →	Molecular Function	glycine N-methyltransferase activity	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0046498 all species →	Biological Process	S-adenosylhomocysteine metabolic process	Interproscan
GO:0046500 all species →	Biological Process	S-adenosylmethionine metabolic process	Interproscan
GO:0051289 all species →	Biological Process	protein homotetramerization	Interproscan
GO:1901052 all species →	Biological Process	sarcosine metabolic process	Interproscan
GO:1904047 all species →	Molecular Function	S-adenosyl-L-methionine binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00552	GNMT; glycine N-methyltransferase	EC:2.1.1.20	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g29331.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

874.3Max TPM

251.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	251.17	874.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	874.34
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	653.56
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	653.06
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	611.31
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	536.18
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	371.24
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	304.22
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	303.09
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	271.62
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	261.63
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	255.20
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	248.77
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	248.13
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	240.65
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	227.27
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	220.86
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	209.25
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	204.40
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	195.08
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	186.89
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	184.28
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	183.76
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	182.86
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	180.87
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	177.03
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	166.90
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	158.20
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	156.71
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	143.02
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	139.98
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	133.23
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	130.25
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	125.20
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	121.15
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	117.24
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	114.28
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	113.14
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	96.80
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	93.90

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.