Gene detail

Detailed information of g29381.t1 in Acropora digitifera

Genomic Location: chr14Alt:3373174...3385286
NR annotation: XP_044174438.1, protein phosphatase 1 regulatory subunit 37-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g29381.t1

ATGGAAACGGGAGAGGATGTTTTGGCGTCGGAAGAGGGTGCAAGTCAAGGCTGCTCGGCGGATCAGAGTAGCAGTAATTGCATCGTTGTTCCTGTTGGTAGCGATCAACGAAGCGGCCGCAAAAAAAAGTTACGAAGGAATGTCACTTTCCCGGACGATGCGCGTCTTGTTCGTGCTTTAGATCCGGTAGATCCGTGGGAGAATGCTGGACATCACAGTAGTGTGGAAGTGATCAATGCCTACAGGAGTACATGTCAGAGAATGAAAATAAAACCATGTGAAAAATTGATCAAACAACTGGAGGCATGTGAAAGTTTTAGAGAGAGAATTGATGTCATAGATTTGAGAGGTGTCAAACTCGATCTAAAGAACTGCGAAGCTCTAGAGGAAGTGTTTAGAAGGGTTAGAACCAAGAATTTAGATCTTGAGAACACATCGCTTGAGGATGATGGAGCTGTGTCACTCTTGGAAATGATTGAGTATTATAAGTCCACTTGTAAGCTCAACCTGGCTTACAATGCTAAAATTAAGATAAGAGGATGGCAAGCCATTGGCAGGACATTGAAGAAGACTCCATGTTTGCATTATCTGGACATACGGAACACAGTGTGGACTGAACAATCAATTCCTCTGTTGGGACGATCTTTGAGAATGGACTGTTGCTTAACTGTGTTACACATGGAAGGCGCCAATCTTACAGGACGACCATTATATCTGCTAGCTAGTGCAGTGAAGTTTAATCACATTCTGAAAGATTTGTTCCTTGGTGACAATAAACTGATACCAAATGATGGGCAGCCACTGGGTGAAATGTTGAAAGGAAATGAACATCTTCAGCTCCTTGATTTAAGAAACAACCCCCTGCAGGACATGGGTGTAGGTTATATATGTGAAGGCCTGGCAGAGCAGCAAAAAGGGGGCTTACAAACTCTTGTGCTTTGGAACACTCAGGTTACCAGCCAAGGAGCAGGGTATCTGGCAAACGCATTGGTGAGCTCCAGTTCTATTCGAACCCTTAATCTGGGCCATAATCGCCTTACTAATGAGGGAGTATGTACGCTGAAAGAGGGCCTACTGAGAAACTACTCTCTACAGAGATTGGGACTCTTGAGTACAAAATTAACAAGTGAAGGAATGATTGCCCTGGCTGAGGTCATTGCTGATAGTAAGACCCTCTTGAGAATGGACCTTCGTGAAAATGATCCTTATGTTGGTGGCCTGATGGCCCTTTCACTGTCACTAAAAGTGAACAAGACCCTTGTGAGGATAGATCTGGACAAGGAGATGAAAAAGGAACCAGGCATGGAGACTACACAAAGAATTCTCCTTGCTGATATCTATGGCTACTGCCAGAGAAACAAGCTTCTTGCCAAGGAACAGGAGGAGAATGAATTGGCTAATGAGAGCCATCCTGAGGAAAGCGTGACCAGTGAAACAGATGGCATTGTTAATGACGTCAGACAAGATTCCGCACACATGCAGCCTCATCTTGAAAGCAAGGTCACACCACACAGTTTTTCACAACTGATCCAATTGGAAACTCCTCCTGATATTATAGACGAGCTTAAAGGGCTGACCGCAGACTACCCTGGTAGTTCGAGATTCACTGTTACAGCTGTGTCAGATGCAGATCAAGCTGTGTGTGAAGACTCAAGTGAAGATGAATTTGCAGCTATGGGAGATAATGATATTCCTTTAGTTGATTTATCAGATTCTAATTCTTTGCCAGACTTACAGAGTTCAACATCCCGCGGCACTAATTTGCTTGATGAAAGATCATCTGATGTCGTGCTTTTAGACTTTGATAGCTCGCAGGATCCCTTATTAAACCCAAAGTCACTTCCTTTGAAACCCACTTCATTACAAACTGATTTGCAGACTGCAGATTCCACATCCTCAGTCCTTGCATTTGAAAAGGAACTGGATTCCATGTTAGCTGGGATGACAGTAAAAGAGACCAACCATAGCCCAGTTCATAATAATGCTATGAAGACTCAAGATTTCTGGAGAAAACAAATGGAGGACCTGATGAAAGGAGCAACGATGAATCCCAACCCACCTTCTACAGTATCTTCTAACAGCGCCGGAAGTGCATCGGCTGATTTACTAAGTTAG

Transcript

chr14Alt.g29381.t1

GACTTACATTAACGCCATGAGTAATAATGGAAACGGGAGAGGATGTTTTGGCGTCGGAAGAGGGTGCAAGTCAAGGCTGCTCGGCGGATCAGAGTAGCAGTAATTGCATCGTTGTTCCTGTTGGTAGCGATCAACGAAGCGGCCGCAAAAAAAAGTTACGAAGGAATGTCACTTTCCCGGACGATGCGCGTCTTGTTCGTGCTTTAGATCCGGTAGATCCGTGGGAGAATGCTGGACATCACAGTAGTGTGGAAGTGATCAATGCCTACAGGAGTACATGTCAGAGAATGAAAATAAAACCATGTGAAAAATTGATCAAACAACTGGAGGCATGTGAAAGTTTTAGAGAGAGAATTGATGTCATAGATTTGAGAGGTGTCAAACTCGATCTAAAGAACTGCGAAGCTCTAGAGGAAGTGTTTAGAAGGGTTAGAACCAAGAATTTAGATCTTGAGAACACATCGCTTGAGGATGATGGAGCTGTGTCACTCTTGGAAATGATTGAGTATTATAAGTCCACTTGTAAGCTCAACCTGGCTTACAATGCTAAAATTAAGATAAGAGGATGGCAAGCCATTGGCAGGACATTGAAGAAGACTCCATGTTTGCATTATCTGGACATACGGAACACAGTGTGGACTGAACAATCAATTCCTCTGTTGGGACGATCTTTGAGAATGGACTGTTGCTTAACTGTGTTACACATGGAAGGCGCCAATCTTACAGGACGACCATTATATCTGCTAGCTAGTGCAGTGAAGTTTAATCACATTCTGAAAGATTTGTTCCTTGGTGACAATAAACTGATACCAAATGATGGGCAGCCACTGGGTGAAATGTTGAAAGGAAATGAACATCTTCAGCTCCTTGATTTAAGAAACAACCCCCTGCAGGACATGGGTGTAGGTTATATATGTGAAGGCCTGGCAGAGCAGCAAAAAGGGGGCTTACAAACTCTTGTGCTTTGGAACACTCAGGTTACCAGCCAAGGAGCAGGGTATCTGGCAAACGCATTGGTGAGCTCCAGTTCTATTCGAACCCTTAATCTGGGCCATAATCGCCTTACTAATGAGGGAGTATGTACGCTGAAAGAGGGCCTACTGAGAAACTACTCTCTACAGAGATTGGGACTCTTGAGTACAAAATTAACAAGTGAAGGAATGATTGCCCTGGCTGAGGTCATTGCTGATAGTAAGACCCTCTTGAGAATGGACCTTCGTGAAAATGATCCTTATGTTGGTGGCCTGATGGCCCTTTCACTGTCACTAAAAGTGAACAAGACCCTTGTGAGGATAGATCTGGACAAGGAGATGAAAAAGGAACCAGGCATGGAGACTACACAAAGAATTCTCCTTGCTGATATCTATGGCTACTGCCAGAGAAACAAGCTTCTTGCCAAGGAACAGGAGGAGAATGAATTGGCTAATGAGAGCCATCCTGAGGAAAGCGTGACCAGTGAAACAGATGGCATTGTTAATGACGTCAGACAAGATTCCGCACACATGCAGCCTCATCTTGAAAGCAAGGTCACACCACACAGTTTTTCACAACTGATCCAATTGGAAACTCCTCCTGATATTATAGACGAGCTTAAAGGGCTGACCGCAGACTACCCTGGTAGTTCGAGATTCACTGTTACAGCTGTGTCAGATGCAGATCAAGCTGTGTGTGAAGACTCAAGTGAAGATGAATTTGCAGCTATGGGAGATAATGATATTCCTTTAGTTGATTTATCAGATTCTAATTCTTTGCCAGACTTACAGAGTTCAACATCCCGCGGCACTAATTTGCTTGATGAAAGATCATCTGATGTCGTGCTTTTAGACTTTGATAGCTCGCAGGATCCCTTATTAAACCCAAAGTCACTTCCTTTGAAACCCACTTCATTACAAACTGATTTGCAGACTGCAGATTCCACATCCTCAGTCCTTGCATTTGAAAAGGAACTGGATTCCATGTTAGCTGGGATGACAGTAAAAGAGACCAACCATAGCCCAGTTCATAATAATGCTATGAAGACTCAAGATTTCTGGAGAAAACAAATGGAGGACCTGATGAAAGGAGCAACGATGAATCCCAACCCACCTTCTACAGTATCTTCTAACAGCGCCGGAAGTGCATCGGCTGATTTACTAAGTTAGAAATCTGACTCGAGTCAAATTAGGCTTATTTTGAAAGAGACATTTTTAATACTTTGAGTACTGATAGATTTGAAAGCGACAACTGAAATTGATCGAAGGCAATAATACCGTATGAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7Z026	Protein phosphatase 1 regulatory subunit 37 OS=Bos taurus OX=9913 GN=PPP1R37 PE=2 SV=1
B2RYF1	Protein phosphatase 1 regulatory subunit 37 OS=Rattus norvegicus OX=10116 GN=Ppp1r37 PE=1 SV=1
Q8BKR5	Protein phosphatase 1 regulatory subunit 37 OS=Mus musculus OX=10090 GN=Ppp1r37 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR051279 all species →	Family	Protein Phosphatase 1 Regulatory and Actin Interaction Protein	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24112 all species →	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030027 all species →	Cellular Component	lamellipodium	Interproscan
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17576	PPP1R37, LRRC68; protein phosphatase 1 regulatory subunit 37	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.