Gene detail

Detailed information of g29488.t2 in Acropora digitifera

Genomic Location: chr14Alt:4474081...4482899
NR annotation: XP_029202834.2, E3 ubiquitin-protein ligase rnf8-like [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr14Alt.g29488.t2

GTCTGTGGAAAGAACGATTCATTTTGTCCTAATAGCATTTTGTTATTGCCAGATAAAGCAACGACCTTTGGCAGAGTCATTTCTGCAGAGACAGATGTTCGGTTGTTGTCAAAGAGCACTCCTTTGATGATTTCTCGTCGACACGCAACGATTTCTGTGTCCGCTGGTAAATGGACGATGGTTGATCATGAGAGCTTGAATGGAGTCTTTATCAATGGAAGCAGAATATTGCCTAATGTGCAGCATATCATTGAAGCTGGTGACAAAATTGCTTTTGGTGTGGGAGTTGATTCAAATCCACCAGAATTTGAATATGTGTTTGAAAATGTTGGAAGAGGAAGGAAGAGGCAGCATGCAGATATTGTAACTTCCTCAGGCAAAGATGTTTTGGCAAAGAGCAGAAAAATTTTATCAGAGAGTAGCAGCTGCATGAATGTGCCTGTCTCTGCTGATGAGACTGCAATCAAGGCAGCATTTGGTGTGGCTGAGGAAAAGATAAAGAAATTGAAGGTGTCATTAGAAGAAAAGGAGAAATGCCATGCTGAAGTTGTTAGTCTGTTAGAAAAAACAGAAAAAGAGATGCAGGCTAAACTCCTTGATCAGAAAGCTACTTTAGAAAAGGAGAAACAGGAGCTTGAAAGTGCGTTGAAAACCCTCTTTTCCGAGAAATTGACTGAGAAGGAAGAACTTTTAAATGAGCAACTGAGGGTTCAGAAAGAGAGCCTTATTATTGAAAAGGAACAAATTGAAGCTCAGCTTCAGGAAGAATTGAACCGAAAACTTGAGGAAAAGGATAAAGAGCTTGAAGACCAGTTAATGCAACAGAAAAATGCTCTGGAGCAAGTGATTGCAGAAAAGGAGGAGCAACAATACAAATTGCACTGCGAGTTAGAAAACTATAGGGCCTCTCAAGCAAGATTGATAGATTTGGAGGCAAATGAAAGAAAAATGGAATCCACATTGCAGGAGTTGCGGCAGATTGTGGAGTCCAAAAACGAGGAACTTCTTAAGCAACAAGAGGAAACAAAACGTGTGAAAGAGGAGACACGAAAAACAGTCATTGAGCAGATGGAAGATGAATTTACGTGCATTATATGCCAAGACCTTTTCATCGACTCTACAACTCTGTCATGTGCTCATTCCTTTTGTGAACATTGCTTGCAAACCTGGCTTCAAAAGAAGAACAACTGTCCCATTTGTCGTCAATTGATCTCAGGAAAGCCAGTCCGGTCTCTTGTTCTTGATAATGCCATTGCCAAAATGGTGGAGTCCATGGATGAAGAGACCAAGACAAGACGGCAAATGGTCAGCCAGGAAAGGCAAGAGTTGAAAAGAGCTGCAGCTCAATCTAGAGCCACACCTGCCTCTGCACAGGGCCTTTCGGTTACTGCAAGTGACATAGGAGCTCATATGCCTGCAGGTCATACCCACCATGCAGCACCTAGGGAGGTACAACACAGAGCACGTAACCCGAGGCCAGGCAGGGCAAGGGAACAACCTTATGAAGTTCAAATTCAAGACCTCCGCCAGGCTGTGGCCCACCAGCGAAATAACTACAATAGGTATTATGAAAACAGGTACTATGGTGGCCATGGCAACCATCCTGGTTACCGCAGTGTGGGTGGTGGCAATAGCGGTGGAAGCATAGAAAGGGATTACAACCATCAGAGTAGTAATTTCATGCAAGGCCTGTCAGGAACCTACTACCCTGGTTATGGTCAGTGCCGTTTATGTGGTATGAGGGGGCACTGGGCAGCAGGATGTCCTTATCAACATTAGAAAGAGTTTCACGTTTTGTTAGAGACATCCCAGTCAGGCACTGGACACAAGGTCTGTTCTGTGGTACACAAAGTTGTCGTGCTTGTATCGTGATGTATATACACCATATAAAATATAAGGAGGGCACAATATTGGACTGCAAAATATTTTTGTTAGCATCTATATATTTAATATCTTATGGCTGTTTCAGTTGTCTTCTGACAAAAATATTAGTCATGATTAATAATGTTATTATATAGTACCTACTGAAAATGAGCACTGTGATAAGAATCAGCTTTGTAAAGAATGAAATTTTGGGTAATAATTTATTGATTCATTAATAATAATTATTGTACAATGTAGTAAACTGATTGAACGGTATCACCCAATACCATTTGTATCTGGAAAAAATCAATGCTGTTGTCCAGAAGTGAGAGAATCAAATCAACCAAACTATTAAAGGGTACAAAATTTCATTCAAAACTTCAAGGCCAATAGCAATTATTAAATAAGTATTTTGCATGGGTTTTGATTGCTGATAATAAGCAAAATTGTGAATTCTGAGAAACAAATTATTATCATAATAATTACATATCGTTGAAAAAATCATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2HJ46	E3 ubiquitin-protein ligase RNF8 OS=Bos taurus OX=9913 GN=RNF8 PE=2 SV=1
Q803C1	E3 ubiquitin-protein ligase rnf8 OS=Danio rerio OX=7955 GN=rnf8 PE=2 SV=1
Q8VC56	E3 ubiquitin-protein ligase RNF8 OS=Mus musculus OX=10090 GN=Rnf8 PE=1 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15067 all species →	E3 UBIQUITIN-PROTEIN LIGASE RNF8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070936 all species →	Biological Process	protein K48-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10667	RNF8; E3 ubiquitin-protein ligase RNF8	EC:2.3.2.27	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.