Gene detail

Detailed information of g2949.t1 in Montipora capitata

Genomic Location: Sc0000047:534743...563254
NR annotation: XP_029188398.2, integrator complex subunit 6-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2949.t1

atggtgatatttgtttttgttgtcgatacctctgcttctatgaaccagaggacgtctgtaggcactacgttgcttgatgtcgccaaaaatgccgtcgaaacctttacaaagctgcgtcagcgagatcagacgagtagaacagaccgatacatgctggtgacgttggaggaaccgccaggagctgtaaaggcgggttggcgagaaaatcaggcaacattcatgaatgaattaaagaatcttcaagccactggtctgtcaaccttgggtacttctttaaaagaagcatttgacttgttgaatttgtatcgtctgcattctgggattgacaactatggaatgggaagaaatccattctatgtggaacctgcaatggtcatctgtataactgatggtagcaagctttcttctcagagtggtgtgcaggaagagcttcaattgcctatgcacacaatgttacctgggcacgagctcacaaacgacccatttcgctgggatcagcgactgttctctatcatcttgcgcatgcctggaactagaagttctttgcctaacaagattgggatgcagagtggtgacccagccatagcagtcatgtgtgaagtcacaggagggagatgctacaaagtgtcatcttccaagtccttgggacaagctttggaatcgcttgcacagaaagtgcaatgtggagtggtgttgaactttgaaaaaattggaggagcttcaaaccctccacctccaccccatgaagttttaaagctaagtggaaatgaactgcgtgatactgactcaccaaccccacctcttttaatgcataaccgtttaatgaacaatatggactatagcaaagaggatgtgaaagacaagaattctcttcctgatgaaaaccatgtagctctaaagacagagggtgtaaaaataaaccaggctggagataatccttcagcaacttcaaactcgcttcatcctgaggataatctaggagttatgggtatttcacggtcagccacaagctcacctgggccacaagcaatgcagacaacagcatggatgagttgccgaaggatgatatttatcaagagtaatccaccagttggacactggcctgtacctgagtcattctggccagatccatccatgcaatccctgcctcctcgagatgcccagccaagtgtgatgttttcatgcaataactcggaacccttagttcttgacaacttgccattcgacaaatatgaactggaaccatcacctcttacacagtatatcttggagaggaaatcaccgtctacttgttggcagacatttattgtaaatagctccaagaaacttggtgacataggatgtccctttggttacctcaaagcaagttccaatcttcaaactgtgaatctgtttgttatgccatacaattttcctgttctttttcctgtcatagatgaacttgtgaaagttcacaagatgaagccaacaacaaagtggaaagaaaaatttgacaactatctgtcagcaatgccaaactactatgctgggccccttcgcaatgcctttcgccgaatgggcattccaccagcctttgtcccagaccatttggattccttcctgagttacacagttgtcaattacctaaagaaagtgaagcaacagagtaaaatggagactgaaaggctcatttcccttgttgggaaaaatgccacaagagatgctgtgccaagaccacttatgagcgtgagaacaccacagctaccaaaagaaaagaaaaaagatttccgtgctcttcttcacagtagtaatttttcggtcaacaatgaagataacagaatatctggtgagactgacatcaatattcccagtgcctcattccacaataccataaagcagaatgttcgtacacaaagttacaagaatccattcgacatttcaagagacgagcttctagaccaagtttctagaatgagaatcaacttctttcatactgcagcaacgtcaacaagacttcaggatgaagatgcacgtcatagtgtggccattgcagacatgggtaattatcaagaagtcctcaggcagttgagtcctctacgtgaagttgatcctggacagaacagagtgcacatgtttggaaacccttttaaactcgccaaagaccagcgggtcatggttgatgaggcagatgtgaatgaagcaatggcaggtccacggtctggtaaaagacctctaatagccaacagacctggttctccaagggataagaagaggcagcaagagaccccaccagtacggtggcccaacaaaacgaaccaaaatgggggaagcccacttcctttgcctcttaacaacaaagtaccacctgacaaaaatgtgatgttacaagatggcaaaataaacagtgtattttcaggccatggaataaaacgaaaaaacaatgagggaagcgaaggtgcaaacaagatgctcaaagcatcaaaaggtcttattaaaccacaacttgcaaagctccagcagagaatacacaacaaagggaaggcaaactgcaaacaacaatcagctgcaaaaagtgatggcaatgcgttggctaagaatgactttgtatcctcaatccttaaagaagcggtaacttctcagagtaaaacattctcaggtcaaggagttcctcttgtcaattcccatgacaattccatgggtaaagataaattgacaaactctgaaaccaaggagccacctttggatggccttacaaaaggaagagcagagggattgtcaccaagatctctgaaaaaacagctattacgagaagcttgggaagaaaataggttaataaaaaatctggtattcagagacataagacaaccagaaaaaagtgacgatgttgtccttaatcgcatcaccaacttgaaaggatctcttgaagttcaaagtgctgcagtacaagaaatcattgaagaagcagaactctttaaaaagaaagcattgattgagagattatcgtcacatcttgaaaccctacagcaaagactttcaccagattcaactgatgctaagcttgcaaagaaaaaaagataa

Transcript

g2949.t1

ATGGTgatatttgtttttgttgtcgATACCTCTGCTTCTATGAACCAGAGGACGTCTGTAGGCACTACGTTGCTTGATGTCGCCAAAAATGCCGTCGAAACCTTTACAAAGCTGCGTCAGCGAGATCAGACGAGTAGAACAGACCGATACATGCTGGTGACGTTGGAGGAACCGCCAGGAGCTGTAAAGGCGGGTTGGCGAGAAAATCAGGCAACATTCATGAATGAATTAAAGAATCTTCAAGCCACTGGTCTGTCAACCTTGGGTACTTCTTTAAAAGAAGCATTTGACTTGTTGAATTTGTATCGTCTGCATTCTGGGATTGACAACTATGGAATGGGAAGAAATCCATTCTATGTGGAACCTGCAATGGTCATCTGTATAACTGATGGTAGCAAGCTTTCTTCTCAGAGTGGTGTGCAGGAAGAGCTTCAATTGCCTATGCACACAATGTTACCTGGGCACGAGCTCACAAACGACCCATTTCGCTGGGATCAGCGACTGTTCTCTATCATCTTGCGCATGCCTGGAACTAGAAGTTCTTTGCCTAACAAGATTGGGATGCAGAGTGGTGACCCAGCCATAGCAGTCATGTGTGAAGTCACAGGAGGGAGATGCTACAAAGTGTCATCTTCCAAGTCCTTGGGACAAGCTTTGGAATCGCTTGCACAGAAAGTGCAATGTGGAGTGGTGTTGAACTTTGAAAAAATTGGAGGAGCTTCAAACCCTCCACCTCCACCCCATGAAGTTTTAAAGCTAAGTGGAAATGAACTGCGTGATACTGACTCACCAACCCCACCTCTTTTAATGCATAACCGTTTAATGAACAATATGGACTATAGCAAAGAGGATGTGAAAGACAAGAATTCTCTTCCTGATGAAAACCATGTAGCTCTAAAGACAGAGGGTGTAAAAATAAACCAGGCTGGAGATAATCCTTCAGCAACTTCAAACTCGCTTCATCCTGAGGATAATCTAggagttatgggtatttcacgGTCAGCCACAAGCTCACCTGGGCCACAAGCAATGCAGACAACAGCATGGATGAGTTGCCGAAGGATGATATTTATCAAGAGTAATCCACCAGTTGGACACTGGCCTGTACCTGAGTCATTCTGGCCAGATCCATCCATGCAATCCCTGcctCCTCGAGATGCCCAGCCAAGTGTGATGTTTTCATGCAATAACTCGGAACCCTTAGTTCTTGACAACTTGCCATTCGACAAATATGAACTGGAACCATCACCTCTTACACAGTATATCTTGGAGAGGAAATCACCGTCTACTTGTTGGCAGACATTTATTGTAAATAGCTCCAAGAAACTTGGTGACATAGGATGTCCCTTTGGTTACCTCAAAGCAAGTTCCAATCTTCAAACTGTGAATCTGTTTGTTATGCCATACAATTTTCCTGTTCTTTTTCCTGTCATAGATGAACTTGTGAAAGTTCACAAGATGAAGCCAACAACAaagtggaaagaaaaatttgacaaCTATCTGTCAGCAATGCCAAACTACTATGCTGGGcCCCTTCGCAATGCCTTTCGCCGAATGGGCATTCCACCAGCCTTTGTCCCAGACCATTTGGATTCCTTCCTGAGTTACACAGTTGTCAATTACCTAAAGAAAGTGAAGCAACAGAGTAAAATGGAGACTGAAAGGCTCATTTCCCTTGTTGGGAAAAATGCCACAAGAGATGCTGTGCCAAGACCACTTATGAGCGTGAGAACACCACAGCtaccaaaagaaaagaaaaaagatttcCGTGCTCTTCTTCACAGTAGTAATTTTTCGGTCAACAATGAAGATAACAGAATATCTGGTGAGACTGACATCAATATTCCCAGTGCCTCATTCCACAATACCATAAAGCAGAATGTTCGTACACAAAGTTACAAGAATCCATTCGACATTTCAAGAGACGAGCTTCTAGACCAAGTTTCTAGAATGAGAATCAACTTCTTTCATACTGCAGCAACGTCAACAAGACTTCAGGATGAAGATGCACGTCATAGTGTGGCCATTGCAGACATGGGTAATTATCAAGAAGTCCTCAGGCAGTTGAGTCCTCTACGTGAAGTTGATCCTGGACAGAACAGAGTGCACATGTTTGGAAACCCTTTTAAACTCGCCAAAGACCAGCGGGTCATGGTTGATGAGGCAGATGTGAATGAAGCAATGGCAGGTCCACGGTCTGGTAAAAGACCTCTAATAGCCAACAGACCTGGTTCTCCAAGGGATAAGAAGAGGCAGCAAGAGACCCCACCAGTACGGTGGCCCAACAAAACGAACCAAAATGGGGGAAGCCCACTTCCTTTGCCTCTTAACAACAAAGTACCACCTGACAAAAATGTGATGTTACAAGATGGCAAAATAAACAGTGTATTTTCAGGCCatggaataaaacgaaaaaacaaTGAGGGAAGCGAAGGTGCAAACAAGATGCTCAAAGCATCAAAAGGTCTTATTAAACCACAACTTGCAAAGCTCCAGCAGAGAATACACAACAAAGGGAAGGCAAACTGCAAACAACAATCAGCTGCAAAAAGTGATGGCAATGCGTTGGCTAAGAATGACTTTGTATCCTCAATCCTTAAAGAAGCGGTAACTTCTCAGAGTAAAACATTCTCAGGTCAAGGAGTTCCTCTTGTCAATTCCCATGACAATTCCATGGGTAAAGATAAATTGACAAACTCTGAAACCAAGGAGCCACCTTTGGATGGCCTTACAAAAGGAAGAGCAGAGGGATTGTCACCAAGATCtctgaaaaaacagctattacgAGAAGCTTGGGAAGAAAATAGGTTAATAAAAAATCTGGTATTCAGAGACATAAGACAACCAGaaaaaaGTGACGATGTTGTCCTTAATCGCATCACCAACTTGAAAGGATCTCTTGAAGTTCAAAGTGCTGCAGTACAAGAAATCATTGAAGAAGCAGAACTCTTTAAAAAGAAAGCATTGATTGAGAGATTATCGTCACATCTTGAAACCCTACAGCAAAGACTTTCACCAGATTCAACTGATGCTAAgcttgcaaagaaaaaaagataa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PCM2	Integrator complex subunit 6 OS=Mus musculus OX=10090 GN=Ints6 PE=1 SV=1
Q9UL03	Integrator complex subunit 6 OS=Homo sapiens OX=9606 GN=INTS6 PE=1 SV=1
Q5U4W6	Integrator complex subunit 6-B OS=Xenopus laevis OX=8355 GN=ints6-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005536 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15300 all species →	INT_SG_DDX_CT_C	INTS6/SAGE1/DDX26B/CT45 C-terminus	Family	Interproscan
PF13519 all species →	VWA_2	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR029307 all species →	Domain	INTS6/SAGE1/DDX26B/CT45, C-terminal	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR051113 all species →	Family	Integrator complex subunit 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12957 all species →	DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13143	INTS6, DDX26; integrator complex subunit 6	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.