Gene detail

Detailed information of g29524.t1 in Acropora digitifera

Genomic Location: chr14Alt:5009076...5026942
NR annotation: XP_029197725.2, calcium-independent protein kinase C-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g29524.t1

ATGGTAGGCTTCACTGGCTACGTAAAGCTGAAGGTGATTGGAGCGACTGATTTGAAACCTGCGATTTTGGCTCAAAGACGTCTAGGTGGACTTAAATCTATCGACCCCTATGTATCTTTAAACGTTGACGACGTGCATATAGCACGGACATCGTCCAAGCAAAAAACTTCGACGCCAATCTGGAACGAAGAGTTTGAACAGGAAATAGAAAATGGAGATAAATTAGGGATAACCGTATTTCACGAAGCTATCATGGGGCCGGATCCATTTGTTGCAGATTCATCGGTGCCTTTCGAAGAGATAATGAACTCAGGAGTCAAAGGATTCTCCGATATCTGGATTTCTCTTGAGCCCGAAGGAAAATTGCACCTACACATTGAACTCAGGCCTGCCATTCAAGATAAGGAAATAAGGGTTTTCAAGGAACGAGAGAGCGGCATTAAAGGACGTAGAGGGGCTATGAGACGTCGAGTACATCAGATTAGCGGACATAAATTTATGGCAGTTTGGCTCAGACAGCCTACGTATTGCTGCCATTGCAAGGATTTCATTTGGGGAGTGTTTAACAAGCAGGGCTACCAATGCCAAGTGTGCACTTGTGTCGTTCACAAACGATGTCACCTGGAGGTGGTGTCTCAGTGCCCAGGAGTCAAACAGGATATGACAGAAGTCTTTCACGAGGAAATGAATGCCCTGAGTAGATCAACCACTGGTTCCTGGCGTTTCAAAGTCAATGTACCACACAGATTTGCTGAACACAATTACATGAGACCAACATTCTGTGACCACTGTGGGTCTCTTCTTTATGGGCTCTTTCGACAAGGGATGCAGTGTTCAGATTGCAAAATGAATGTTCATATCAGATGTCAAAAAAATGTAGCAAACAACTGTGGCCTTAATGCGAAAGAGATGGCACAGATTCTTAAAGACATGGGAACTACGGGAAACAAGCTGACAGAATCCATGAGAGTTAAAAAGCCATCAATTCAATACAATGGATCACATGCCAAGACTGACAAAAAAACCAAGGGCCTTGATCCACCGCCAATAAAACCTGATAACTTGGAAACCTCACCTGGAGTACGGAGACGGCAGAAGAAGTTTGGACTGTCTGATTTTAAGTTTATTAAAGTTTTAGGAAAAGGAAGTTTTGGCAAGGTACTGCTAGCAGAGAGAAAAGGATGTGATGAAATTTATGCTGTTAAAATCTTAAAGAAGGAGACAGTTCTTCAAGATGATGATGTAGAATGCACAATGATTGAAAGACGAGTATTAACAATATCAGCTGGACATCCCTACCTTACAGCACTCTATTGCAGCTTCCAAACAGAGGATCGATTGTTCCTTGTGATGGAATATGTAAATGGTGGGGACTTGATGTTTCAAATTCAAAAAGCAAGAAAATTCAATGAAGAGAGATCTAGATTTTATGCTGCTGAGGTAGTGCTTGCACTTCAGTACCTTCATCAAAATGGTGTTATTTATAGGGATTTAAAACTGGACAATGTTCTACTAGACAAAGATGGACACATCAAGCTGGCTGATTTTGGAATGTGCAAAGAAAACATGAAACCAGGAGGCTATACAAACACTTTCTGTGGAACACCGGACTACATTGCACCTGAGATTCTTCAAGAAAAACCTTATGGCTTCTCTGTGGACTGGTGGGCACTGGGTGTACTCATGTACGAAATGATGGCGGGACAGCCTCCGTTCGAAGCTGATAACGAAGACGACCTTTTCGAGTCCATAAAACACGATGACGTACTGTACCCTGTTTGGCTTTCGAAAGAAGCGGTATCAATATTAAAAGGATTTATGACGAAAAATTGCACAAAAAGGCTTGGTTGCACAGCTTGTGGAGAACAGAGCATTCTGGATCATCCGTTCTTTAGGGACATAGACTGGTACAAGTTAGAAGCGAGGCAGATAACGCCGCCATTCAAACCAACAATACGTTCAAAAACAGATGTAAGGAACTTCGACACAGATTTTACCAGAGAAGAACCTAAGCTTACGCCAACTGACAAGAATGTCCTCGCAAACATTAACCAAGAGGAATTCAAGGATTTCAGCTTCATCAATGCTAAATTCGCGAACGATGGTAACCTTGTATGA

Transcript

chr14Alt.g29524.t1

GAGAATATTGTTATTGACTGCAAGAGTGGTGTGGTGTATTGGTCGGAGTAGGTCTTCGTGAGCAAATCGAAGAATGCTGTGCTTTCCGTAGACTTAAGGAGTATTTTTGCACGTTGTTTAGTGTCGAACGTTGTTTAGAGCAAGATGGTAGGCTTCACTGGCTACGTAAAGCTGAAGGTGATTGGAGCGACTGATTTGAAACCTGCGATTTTGGCTCAAAGACGTCTAGGTGGACTTAAATCTATCGACCCCTATGTATCTTTAAACGTTGACGACGTGCATATAGCACGGACATCGTCCAAGCAAAAAACTTCGACGCCAATCTGGAACGAAGAGTTTGAACAGGAAATAGAAAATGGAGATAAATTAGGGATAACCGTATTTCACGAAGCTATCATGGGGCCGGATCCATTTGTTGCAGATTCATCGGTGCCTTTCGAAGAGATAATGAACTCAGGAGTCAAAGGATTCTCCGATATCTGGATTTCTCTTGAGCCCGAAGGAAAATTGCACCTACACATTGAACTCAGGCCTGCCATTCAAGATAAGGAAATAAGGGTTTTCAAGGAACGAGAGAGCGGCATTAAAGGACGTAGAGGGGCTATGAGACGTCGAGTACATCAGATTAGCGGACATAAATTTATGGCAGTTTGGCTCAGACAGCCTACGTATTGCTGCCATTGCAAGGATTTCATTTGGGGAGTGTTTAACAAGCAGGGCTACCAATGCCAAGTGTGCACTTGTGTCGTTCACAAACGATGTCACCTGGAGGTGGTGTCTCAGTGCCCAGGAGTCAAACAGGATATGACAGAAGTCTTTCACGAGGAAATGAATGCCCTGAGTAGATCAACCACTGGTTCCTGGCGTTTCAAAGTCAATGTACCACACAGATTTGCTGAACACAATTACATGAGACCAACATTCTGTGACCACTGTGGGTCTCTTCTTTATGGGCTCTTTCGACAAGGGATGCAGTGTTCAGATTGCAAAATGAATGTTCATATCAGATGTCAAAAAAATGTAGCAAACAACTGTGGCCTTAATGCGAAAGAGATGGCACAGATTCTTAAAGACATGGGAACTACGGGAAACAAGCTGACAGAATCCATGAGAGTTAAAAAGCCATCAATTCAATACAATGGATCACATGCCAAGACTGACAAAAAAACCAAGGGCCTTGATCCACCGCCAATAAAACCTGATAACTTGGAAACCTCACCTGGAGTACGGAGACGGCAGAAGAAGTTTGGACTGTCTGATTTTAAGTTTATTAAAGTTTTAGGAAAAGGAAGTTTTGGCAAGGTACTGCTAGCAGAGAGAAAAGGATGTGATGAAATTTATGCTGTTAAAATCTTAAAGAAGGAGACAGTTCTTCAAGATGATGATGTAGAATGCACAATGATTGAAAGACGAGTATTAACAATATCAGCTGGACATCCCTACCTTACAGCACTCTATTGCAGCTTCCAAACAGAGGATCGATTGTTCCTTGTGATGGAATATGTAAATGGTGGGGACTTGATGTTTCAAATTCAAAAAGCAAGAAAATTCAATGAAGAGAGATCTAGATTTTATGCTGCTGAGGTAGTGCTTGCACTTCAGTACCTTCATCAAAATGGTGTTATTTATAGGGATTTAAAACTGGACAATGTTCTACTAGACAAAGATGGACACATCAAGCTGGCTGATTTTGGAATGTGCAAAGAAAACATGAAACCAGGAGGCTATACAAACACTTTCTGTGGAACACCGGACTACATTGCACCTGAGATTCTTCAAGAAAAACCTTATGGCTTCTCTGTGGACTGGTGGGCACTGGGTGTACTCATGTACGAAATGATGGCGGGACAGCCTCCGTTCGAAGCTGATAACGAAGACGACCTTTTCGAGTCCATAAAACACGATGACGTACTGTACCCTGTTTGGCTTTCGAAAGAAGCGGTATCAATATTAAAAGGATTTATGACGAAAAATTGCACAAAAAGGCTTGGTTGCACAGCTTGTGGAGAACAGAGCATTCTGGATCATCCGTTCTTTAGGGACATAGACTGGTACAAGTTAGAAGCGAGGCAGATAACGCCGCCATTCAAACCAACAATACGTTCAAAAACAGATGTAAGGAACTTCGACACAGATTTTACCAGAGAAGAACCTAAGCTTACGCCAACTGACAAGAATGTCCTCGCAAACATTAACCAAGAGGAATTCAAGGATTTCAGCTTCATCAATGCTAAATTCGCGAACGATGGTAACCTTGTATGACTCGACATTGTATATAGAGCCAGCAACAAACACAACAGAAGAAAATTTTATTCCCGAATGAAAAATTTTATCTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16975	Calcium-independent protein kinase C OS=Aplysia californica OX=6500 GN=PRKC2 PE=1 SV=1
Q02156	Protein kinase C epsilon type OS=Homo sapiens OX=9606 GN=PRKCE PE=1 SV=1
P16054	Protein kinase C epsilon type OS=Mus musculus OX=10090 GN=Prkce PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00433 all species →	Pkinase_C	Protein kinase C terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR000961 all species →	Domain	AGC-kinase, C-terminal	Interproscan
IPR020454 all species →	Domain	Diacylglycerol/phorbol-ester binding	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR014376 all species →	Family	Protein kinase C, delta/epsilon/eta/theta types	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR017892 all species →	Domain	Protein kinase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24351 all species →	RIBOSOMAL PROTEIN S6 KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0004697 all species →	Molecular Function	diacylglycerol-dependent serine/threonine kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18050	PRKCE; novel protein kinase C epsilon type	EC:2.7.11.13	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.