Gene detail

Detailed information of g29622.t1.1 in Astreopora myriophthalma

Genomic Location: :...
NR annotation: XP_044177382.1, LOW QUALITY PROTEIN: nematocyst expressed protein 6-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

g29622.t1

ATGTCTCTCACACGCAGCAAAACGACAAATTTATCAAACAGAGCTAAGGCATTCTCGATTGCTTCTCTGGTGAACGACGAGCACCTCGCCAACGGACGTGATGACAAAGCCTTGTCAAAAGATTCCGAGATGGAAGCCGAGTCACTGAGTGAGTCTCCTGTGCCGagaaaaaagctgaaaagtATAAAACCGCAGGTCATCCTAGAAGGCAAGGAGCTGTGGAACTGTTTCTACCGCTTGGGTACAGAAATGATAATCACCAAGACAGGAAGGCGCATGTTCCCGACCCTGCGTGTCTCATTTGCAGGACTCGACCCTGGGGCCACCTATGCTGTCATTCTGGACATTATTCCAGTGGATGCAAAACGCCATCGTTACTCGTATTCGGACTCGGCTTGGTTCGTAGCGGGCGAAGGCGATGTCGCGCCGCCTCGGGTCACGTGTGTGCATCCGGACTCACCGTTCTCTGGTCAGCAGCTACTGAGACAAGTGCTCTCCTTTGAGAAGGTCAAGTTGACCAACAACCGGGATGACAAGCGAGGAAATATCATTCTCAACTCGATGCACAAGTATCAACCAAGAATTCACTTGCTCAAGAATCCTGAAGCACAAGAGGAGAAACCCGACCTAACGCGTGCTCACACATTTGTCTTCCCAGAGACGATATTTATGGCGGTGACATCATACCAGAACCACCTTATAACTCGACTCAAGATTTACAGCAATCCATTTGCCAAAGGATTCAGAGATTCGATAAGATTCTTAGGCAACACAGAAAGAGAGAGTTTCCTGATGTCAAATGGCTTTCAGGCGTTTAGCGAAAATCAGGACAATGCGTACTTAATGTCCAGCAGCATGCTGGCTCATGGCGGCTCCCGGGACTTGTTTAATGATGGAGATATCTGCGACACCAGAAACACCACACAGGGAGATTGTTGTGTGTTTCCCTTCACTTACCGCGGAGAGACCTATTACGAGTGCACCACGCGGGACTTCAATGGCCAAGAGTGGTGCTCGCTTGATGAAGATTACGAACAACACAAGCGGTGGGGAAACTGCGCAAAACAGACAAGGAAACCTGTATTTGACGCAATCCTTGATGCGACGGGACAAAATGGCAGGTCGCGAGaCGGTGTCGAATATTTGTATCAAGGTGACATCATTATGACCGCTGAAATTCGCGACCAGCTCAGAAACCGAGGGATCTGGATGCCTGGTGACAATGCAAGCCGTCTGCTTCCTCAGGGGTGGCGTGCGGAGAAGCAGAAGAGACCTAAAAGGGCCATCATGAGAACAAACAGAGGAAGTGACTTACGATGGCCCGTTGGCACCAATGGAAAGAGAGAAGTGCCCTATGAAATTACAAGATTCGATAGTAACGTTCGTGGTGTTATTGTGCGTGCTATGAATCACTGGATGGAGAAAGTCAGATGCCTCAAGTTTGTTCCCAGGACTTCGAGTCACGGGCGCTACCTAAGCTTTTTCGCCGGAGGCGGATGTTATTCCATGGTGGGTCGCCAGCCGGGAAGTGGAGCCCAGAGAATTTCAATCGGAAATGGATGTGGCTACCTCGGTGTTGTAGCACATGAGATCGGACATGCCCTCGGGTTCTGGCACGAGCAATCCCGTCCCGATAGAGACAACTACGTAACAATCAACTGGTCGAACATTCAACGAGGCATGGCATACAACTTTCACAAGTACGATACCAATCGCGTTGACAGTCGAGGCATTTCGTACGATTACGACAGCATTATGCACTACTCCTCCACGGCCTTCGCCAACCGAGCGGGAGTGAGAACCATCGTTGGCAAGAACGGTCGCACTAACCTTGGTCAGAGGTATGGATTGAGCAAGAAGGACATTCAACAAGCGAATCTGTTGTACTGCGGAGCACAACCACCGATCACCGCTTCTCCACCTAAGCCTCCAACGCCTCCACCACCAGGTTGCCAAAAAATCGACCGACATTATTGGTGTCCCTTCTGGAAAAGTCAAGGATATTGCAGAAGAGACAGCAGACATTTCAAATTCATGAACAAAGAGTGCGAGAAAAGCTGCAAGTGTGAGACAATCGTTGtctgcaaaaacaaacatgagAATTGTGGATACTGGGCGAAAAGGGGCTACTGTCGATCCTACCGACCTTACATGGACGTCCATTGCAAGGAGAGCTGTGGCAAGTGTTAA

Transcript

g29622.t1

Protein

Uniprot

Uniprot term	Description
Q8UW76	T-box transcription factor TBX20 OS=Gallus gallus OX=9031 GN=TBX20 PE=2 SV=1
Q9UMR3	T-box transcription factor TBX20 OS=Homo sapiens OX=9606 GN=TBX20 PE=1 SV=4
Q9ES03	T-box transcription factor TBX20 OS=Mus musculus OX=10090 GN=Tbx20 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01400	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF00040	fn2	Fibronectin type II domain	Domain	Interproscan
PF00907	T-box	T-box	Domain	Interproscan
PF01549	ShK	ShK domain-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001506	Domain	Peptidase M12A	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR034035	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR000562	Domain	Fibronectin type II domain	Interproscan
IPR036943	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR003582	Domain	ShKT domain	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08630	ADAMTS16; a disintegrin and metalloproteinase with thrombospondin motifs 16	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala