Gene detail

Detailed information of g2972.t1 in Montipora capitata

Genomic Location: Sc0000048:59113...78682
NR annotation: XP_029207740.2, partitioning defective 3 homolog isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2972.t1

atgaaagttacagtttgtttcgaagctgtgtgcgtcattgttccttgtggcaaaggagatttgactgtccgcgaactcatacaacgctccgtttcgagataccggaaagctaccaacaagtccaccgatgaattcattgaagttcattatttggagacaagcgatgaccatggaatacttgatccagacgatttgctatgcgatgtcgttgatgacaaagacaagttacttgcagtctttcaagagggttctactatccaccggccaacacagaatggggggtatcgaagtgcttcgtcagctggaactgcaagcccagatctctcgcctccggaggatgagtcaccaaagtatatagaggaaccacatactcacaaatcatacctacctattgacagtaaggttgaaaacaccaatggagaaattattagcaattcatcaaggtcaagaaagagccctccacccacagtggcaccaaaacctctgagaacagtgcggcacataagtgtcagtagtagaacgtcttacaatgaatctgtgccatcagaggattctgggatttctatgcgtgatgatcgtgatagataccgaatcggttcagattcatcaaagtctgagataaatgaaaatgtgtcagtgaaacatgcgatttacaggagaaaatctggagaaaccacttttgccgctataggtatgcccataaaaagggcactttacaatggtctttcaaatggtgacagaacacgtctttcctcaactagttctgatcatgctgatactgagaacagtgaagttgaagaggagacattttctttgggacgtaattcgacacgaaagtctatgttttcagacagcccgatgatggacagatgggctgaattgcaggaacaaaagatgtttgaggtaaataataacagagaagaaccagtgagtaatgtcacatctccatcagagccaagctcaaatgaacctgactttggtgtaaaatatgacgagaaggattcagttacttcagaaagcagtggagagcctgatatacttacgattgagctaaagcgagataatcctttggaaagcttgggcttcaccgtagcagggtatcgcactgcggatggcagggagcttggtctcattgttcgtgatatttcacctgatggttgtgcagcaagagatggcaggcttgacatcgctgataggattgttgaagttaatggatggagtctcatggatatgccaaatgaaagagctgaggagctttttgcctccgctatcaatgcttctgtcgtcaccatgggcgtgtcgcgatcgcattcatttgtacctggtcaaaagaattatgaaccgcctgaagaggaaataatccaggcaacaccgaagtttgaaaatgaagaatcaggccaccaagaacagccgttgacgcctcggtcatttgttgggtcgccgtccattcctgattccagcgtcaaaaaagttagcaagagaattctgatcgagttgatgaaagggaatgatggacttgggtttagcatcacaactcgtgataaccctgctggtggcaatacaccgatatttgtgaaaggtgttctaccgaaaggtgccgctattgaagatggacggttgaggagtggagatcaaattttggaggttaacggccagaaaatgaatggaaaaagtcaacctgaagctgtgaatgttttgcgaagcactcgtggcttggtaaagattttagttcaacgagaggaactcacggcgcaatcgcctcgaacgcccgccatccagctgactcaggtaaacgaagacagcttacgtcacttccgagaggaaggccttcaggtgctcacgttcaaaattcctctggacatgtcgggtgcggcagggctgggtgtgagcgtaaaaggcaaacgtcatggaactcctgaccaggatgagggcaatacacaagacaaaggaatctattgcaagtccatcattcttggtggcgctgccgccaaagatggccgccttcgccccgaagatcaactactgcgggttaacggcaaatcattggtcggattaacgaaccaattggcgatgaaaactctcaggcacgcgatgcagtccacgcgacctaatcaagctttcattgacgtcaccatagcgcgagaacaagaggacgcggtacctcctcctggcgctttgctccaaagtcgctccctggaaaaccttaatgcgccagatcaagagagaccgatagaggctggttccgaggaaaaaagagtggaggaaccacagaatgcaagctccgaagttgacggcgttcctcgaaaaacgaggctttccagcggcgaagaggaccgatttgatgaaccgtccttaaacaggaacttaacaccaatgcgagcaagaaatgccgtacatcgaaacgattcttattgtgttgcggtaaacaagaatttgagtcctggtggcgcgttttacagtccttatagacaacgtccgattcaccgaccaagtcccttagccatggaaaatgcccgaccgcagaactctcgctccggttcccctgcaatgacatcaacaccagtggacattcgacctggagatgctccaaatgttccttttgggaggcccactagcactgttgccatgccaacgcccccgttaggaagcactgaggagaggccctcggctccagctagcccttcacagggtcctttgcaagtacctccgccccagcctccgcccaggtgggactctgaagcggatacctcggagatcgactactcattgccctcggggctccaattgcgggtcaaaatgccggacgttcaaagatcccctgagaggggaaccacgccaactggtaccccacctcttcctcccgcccagttttcgaacgaggaacccatcaaggagctgcctccgtcatacgaccaggcagtagcccgacttggaaagtctcctcatgcttcggtgagctcagaaccttccacccccagcagggaacagcggaagtcgtggagtgaatatatgaatggcgagactcctattattcggcctccaagtccttttaccacagatgactctaacccatttagaagagatggattcgggaggatttcaatttcggaaaaaagaggaagagccacgctggacgcgagacagtcagaatatttcaataaacgcgagcaagacgaggaagaaggttatcgctcggaagaaaatgaggaggacgagcaggacgaggcgacgaaaccagaagcatcgaacacacgccaacctctcagaagagctgattcagaagaattattaccacagcaattcgacaaaggttctcaagaggaaaggcggtcactacccagtcgaatgcataaaagcaaatcaactggtcaactcaagcttcttgcagctaaagacacaaaaaacaaaaggtcgaaaagtaacgacaatctaagttttacgaaggctgtggagaacgctaactattcttaccaaggtggtgacgtaccaaatggtcacgcacgcgttagtccgactgatgaagaagtacccataacgatgagaagtaatgcagccttcaccgatgtgcaacagaaggttgctgtcaagaaacctttttacaagggaatcggcaacgtatttaaaatggggaaaaccaaacgcggggattacagccttacgaacaacgatagtccctcattcacgcacacctataacaaagaggctctcatagactttccagcagagcagcgctacagacagcttgtcaatcactatggccaagacaagagctcgggtcgctcaaacactcttccgtcacgtggtcgaaaaaaacaggaagcagccaaggaaaaagccgctgctgttgaaagacgcactcctccccctcctccgatgatgaaagtcggaagggtgactatttctgcgcctacgagggtctga

Transcript

g2972.t1

ATGAAAGTTACAGTTTGTTTCGAAGCTGTGTGCGTCATTGTTCCTTGTGGCAAAGGAGATTTGACTGTCCGCGAACTCATACAACGCTCCGTTTCGAGATACCGGAAAGCTACCAACAAGTCCACCGATGAATTCATTGAAGTTCATTATTTGGAGACAAGCGATGACCATGGAATACTTGATCCAGACGATTTGCTATGCGATGTCGTTGATGACAAAGACAAGTTACTTGCAGTCTTTCAAGAGGGTTCTACTATCCACCGGCCAACACAGAATGGGGGGTATCGAAGTGCTTCGTCAGCTGGAACTGCAAGCCCAGATCTCTCGCCTCCGGAGGATGAGTCACCAAAGTATATAGAGGAACCACATACTCACAAATCATACCTACCTATTGACAGTAAGGTTGAAAACACCAATGGAGAAATTATTAGCAATTCATCAAGGTCAAGAAAGAGCCCTCCACCCACAGTGGCACCAAAACCTCTGAGAACAGTGCGGCACATAAGTGTCAGTAGTAGAACGTCTTACAATGAATCTGTGCCATCAGAGGATTCTGGGATTTCTATGCGTGATGATCGTGATAGATACCGAATCGGTTCAGATTCATCAAAGTCTGAGATAAATGAAAATGTGTCAGTGAAACATGCGATTTACAGGAGAAAATCTGGAGAAACCACTTTTGCCGCTATAGGTATGCCCATAAAAAGGGCACTTTACAATGGTCTTTCAAATGGTGACAGAACACGTCTTTCCTCAACTAGTTCTGATCATGCTGATACTGAGAACAGTGAAGTTGAAGAGGAGACATTTTCTTTGGGACGTAATTCGACACGAAAGTCTATGTTTTCAGACAGCCCGATGATGGACAGATGGGCTGAATTGCAGGAACAAAAGATGTTTGAGGTAAATAATAACAGAGAAGAACCAGTGAGTAATGTCACATCTCCATCAGAGCCAAGCTCAAATGAACCTGACTTTGGTGTAAAATATGACGAGAAGGATTCAGTTACTTCAGAAAGCAGTGGaGAGCCTGATATACTTACGATTGAGCTAAAGCGAGATAATCCTTTGGAAAGCTTGGGCTTCACCGTAGCAGGGTATCGCACTGCGGATGGCAGGGAGCTTGGTCTCATTGTTCGTGATATTTCACCTGATGGTTGTGCAGCAAGAGATGGCAGGCTTGACATCGCTGATAGGATTGTTGAAGTTAATGGATGGAGTCTCATGGATATGCCAAATGAAAGAGCTGAGGAGCTTTTTGCCTCCGCTATCAATGCTTCTGTCGTCACCATGGGCGTGTCGCGATCGCATTCATTTGTACCTGGTCAAAAGAATTATGAACCGCCTGAAGAGGAAATAATCCAGGCAACACcgaagtttgaaaatgaagaatcAGGCCACCAAGAACAGCCGTTGACGCCTCGGTCATTTGTTGGGTCGCCGTCCATTCCTGATTCCAGCGTCAAAAAAGTTAGCAAGAGAATTCTGATCGAGTTGATGAAAGGGAATGATGGACTTGGGTTTAGCATCACAACTCGTGATAACCCTGCTGGTGGCAATACACCGATATTTGTGAAAGGTGTTCTACCGAAAGGTGCCGCTATTGAAGATGGACGGTTGAGGAGTGGAGATCAAATTTTGGAGgTTAACGGCCAGAAAATGAATGGAAAAAGTCAACCTGAAGCTGTGAATGTTTTGCGAAGCACTCGTGGCTTGGTAAAGATTTTAGTTCAACGAGAGGAACTCACGGCGCAATCGCCTCGAACGCCCGCCATCCAGCTGACTCAGgtaaaCGAAGACAGCTTACGTCACTTCCGAGAGGAAGGCCTTCAGGTGCTCACGTTCAAAATTCCTCTGGACATGTCGGGTGCGGCAGGGCTGGGTGTGAGCGTAAAAGGCAAACGTCATGGAACTCCTGACCAGGATGAGGGCAATACACAAGACAAAGGAATCTATTGCAAGTCCATCATTCTTGGTGGCGCTGCCGCCAAAGATGGCCGCCTTCGCCCCGAAGATCAACTACTGCGGGTTAACGGCAAATCATTGGTCGGATTAACGAACCAATTGGCGATGAAAACTCTCAGGCACGCGATGCAGTCCACGCGACCTAATCAAGCTTTCATTGACGTCACCATAGCGCGAGAACAAGAGGACGCGGTACCTCCTCCTGGCGCTTTGCTCCAAAGTCGCTCCCTGGAAAACCTTAATGCGCCAGATCAAGAGAGACCGATAGAGGCTGGTTCCGAGGAAAAAAGAGTGGAGGAACCACAGAATGCAAGCTCCGAAGTTGACGGCGTTCCTCGAAAAACGAGGCTTTCCAGCGGCGAAGAGGACCGATTTGATGAACCGTCCTTAAACAGGAACTTAACACCAATGCGAGCAAGAAATGCCGTACATCGAAACGATTCTTATTGTGTTGCGGTAAACAAGAATTTGAGTCCTGGTGGCGCGTTTTACAGTCCTTATAGACAACGTCCGATTCACCGACCAAGTCCCTTAGCCATGGAAAATGCCCGACCGCAGAACTCTCGCTCCGGTTCCCCTGCAATGACATCAACACCAGTGGACATTCGACCTGGAGATGCTCCAAATGTTCCTTTTGGGAGGCCCACTAGCACTGTTGCCATGCCAACGCCCCCGTTAGGAAGCACTGAGGAGAGGCCCTCGGCTCCAGCTAGCCCTTCACAGGGTCCTTTGCAAGTACCTCCGCCCCAGCCTCCGCCCAGGTGGGACTCTGAAGCGGATACCTCGGAGATCGACTACTCATTGCCCTCGGGGCTCCAATTGCGGGTCAAAATGCCGGACGTTCAAAGATCCCCTGAGAGGGGAACCACGCCAACTGGTACCCCACCTCTTCCTCCCGCCCAGTTTTCGAACGAGGAACCCATCAAGGAGCTGCCTCCGTCATACGACCAGGCAGTAGCCCGACTTGGAAAGTCTCCTCATGCTTCGGTGAGCTCAGAACCTTCCACCCCCAGCAGGGAACAGCGGAAGTCGTGGAGTGAATATATGAATGGCGAGACTCCTATTATTCGGCCTCCAAGTCCTTTTACCACAGATGACTCTAACCCATTTAGAAGAGATGGATTCGGGAGGATTTCAATTTCGGAAAAAAGAGGAAGAGCCACGCTGGACGCGAGACAGTCAGAATATTTCAATAAACGCGAGCAAGACGAGGAAGAAGGTTATCGCTCGGAAGAAAATGAGGAGGACGAGCAGGACGAGGCGACGAAACCAGAAGCATCGAACACACGCCAACCTCTCAGAAGAGCTGATTCAGAAGAATTATTACCACAGCAATTCGACAAAGGTTCTCAAGAGGAAAGGCGGTCACTACCCAGTCGAATGCATAAAAGCAAATCAACTGGTCAACTCAAGCTTCTTGCAGCTAAAgacacaaaaaacaaaagGTCGAAAAGTAACGACAATCTAAGTTTTACGAAGGCTGTGGAGAACGCTAACTATTCTTACCAAGGTGGTGACGTACCAAATGGTCACGCACGCGTTAGTCCGACTGATGAAGAAGTACCCATAACGATGAGAAGTAATGCAGCCTTCACCGATGTGCAACAGAAGGTTGCTGTCAAGAAACCTTTTTACAAGGGAATCGGCAACGTATTTAAAATGGGGAAAACCAAACGCGGGGATTACAGCCTTACGAACAACGATAGTCCCTCATTCACGCACACCTATAACAAAGAGGCTCTCATAGACTTTCCAGCAGAGCAGCGCTACAGACAGCTTGTCAATCACTATGGCCAAGACAAGAGCTCGGGTCGCTCAAACACTCTTCCGTCACGTGGTCGAAAAAAACAGGAAGCAGCCAAGGAAAAAGCCGCTGCTGTTGAAAGACGCACTCCTCCCCCTCCTCCGATGATGAAAGTCGGAAGGGTGACTATTTCTGCGCCTACGAGGGTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z340	Partitioning defective 3 homolog OS=Rattus norvegicus OX=10116 GN=Pard3 PE=1 SV=1
Q8TEW0	Partitioning defective 3 homolog OS=Homo sapiens OX=9606 GN=PARD3 PE=1 SV=2
Q99NH2	Partitioning defective 3 homolog OS=Mus musculus OX=10090 GN=Pard3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002869 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12053 all species →	Par3_HAL_N_term	N-terminal of Par3 and HAL proteins	Family	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR052213 all species →	Family	Partitioning defective 3 homolog	Interproscan
IPR021922 all species →	Domain	Par3/HAL, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16484 all species →	PARTITIONING DEFECTIVE 3 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0030010 all species →	Biological Process	establishment of cell polarity	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043296 all species →	Cellular Component	apical junction complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0051660 all species →	Biological Process	establishment of centrosome localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04237	PARD3; partitioning defective protein 3	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2972.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

108.8Max TPM

41.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	38.49	86.06
whole organisms · low pH treatment	15	15	45.38	108.78
whole organisms · extra low pH treatment pH treatment	12	12	40.87	92.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	86.06
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	83.46
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	72.60
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	68.79
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	66.70
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	58.54
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	56.99
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	50.67
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	45.80
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	28.45
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	20.32
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	20.10
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	19.91
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	19.10
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	17.95
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	17.90
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	17.76
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	17.51
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	15.56
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	13.33
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	10.82
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	108.78
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	102.75
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	90.67
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	51.32
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	50.14
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	48.10
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	45.86
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	45.19
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	42.63
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	21.01
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	20.89
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	18.28
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	15.18
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	10.71
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	9.19
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	92.70
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	67.00
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	57.57
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	55.39
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	51.80
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	47.04
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	46.24
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	18.72
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	17.63
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	15.90
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	11.21
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	9.27

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.