Detailed information of g298.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002169878.1, E3 ubiquitin-protein ligase RNF113A [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O15541E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1
Q67ER4E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1
Q8IZP6RING finger protein 113B OS=Homo sapiens OX=9606 GN=RNF113B PE=1 SV=3
Gene familySubfamily
Transcription Factors Familyzf-CCCH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01580FtsK_SpoIIIEFtsK/SpoIIIE familyDomainInterproscan
PF09397FtsK_gammaFtsk gamma domainDomainInterproscan
PF17854FtsK_alphaFtsK alpha domainDomainInterproscan
PF04989RMNT_CmcIRhamnosyl O-methyltransferase/CmcIFamilyInterproscan
PF00224PKPyruvate kinase, barrel domainDomainInterproscan
PF02887PK_CPyruvate kinase, alpha/beta domainDomainInterproscan
PF00181Ribosomal_L2Ribosomal Proteins L2, RNA binding domainDomainInterproscan
PF00189Ribosomal_S3_CRibosomal protein S3, C-terminal domainDomainInterproscan
PF00237Ribosomal_L22Ribosomal protein L22p/L17eDomainInterproscan
PF03947Ribosomal_L2_CRibosomal Proteins L2, C-terminal domainDomainInterproscan
PF07650KH_2KH domainDomainInterproscan
PF00481PP2CProtein phosphatase 2CFamilyInterproscan
PF00566RabGAP-TBCRab-GTPase-TBC domainFamilyInterproscan
PF10206WRWMitochondrial F1F0-ATP synthase, subunit fFamilyInterproscan
PF10791F1F0-ATPsyn_FMitochondrial F1-F0 ATP synthase subunit F of fungiFamilyInterproscan
PF13378MR_MLE_CEnolase C-terminal domain-likeDomainInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF13920zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002543DomainFtsK domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR018541DomainFtsK gamma domainInterproscan
IPR050206FamilyFtsK/SpoIIIE/SftA cell division and DNA translocationInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR041027DomainFtsK alpha domainInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR007072FamilyRhamnosyl O-methyltransferaseInterproscan
IPR015806Homologous_superfamilyPyruvate kinase, insert domain superfamilyInterproscan
IPR001697FamilyPyruvate kinaseInterproscan
IPR015793DomainPyruvate kinase, barrelInterproscan
IPR015813Homologous_superfamilyPyruvate/Phosphoenolpyruvate kinase-like domain superfamilyInterproscan
IPR040442Homologous_superfamilyPyruvate kinase-like domain superfamilyInterproscan
IPR036918Homologous_superfamilyPyruvate kinase, C-terminal domain superfamilyInterproscan
IPR015795DomainPyruvate kinase, C-terminalInterproscan
IPR011037Homologous_superfamilyPyruvate kinase-like, insert domain superfamilyInterproscan
IPR004044DomainK Homology domain, type 2Interproscan
IPR002171FamilyLarge ribosomal subunit protein uL2Interproscan
IPR014726Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 3Interproscan
IPR022666DomainLarge ribosomal subunit protein uL2, RNA-binding domainInterproscan
IPR001351DomainSmall ribosomal subunit protein uS3, C-terminalInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR022669DomainLarge ribosomal subunit protein uL2, C-terminalInterproscan
IPR001063FamilyLarge ribosomal subunit protein uL22Interproscan
IPR036394Homologous_superfamilyRibosomal protein uL22 superfamilyInterproscan
IPR022671Conserved_siteLarge ribosomal subunit protein uL2, conserved siteInterproscan
IPR036419Homologous_superfamilyRibosomal protein S3, C-terminal domain superfamilyInterproscan
IPR015946Homologous_superfamilyK homology domain-like, alpha/betaInterproscan
IPR014722Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 2Interproscan
IPR005880FamilyLarge ribosomal subunit protein uL2, bacterial/organellar-typeInterproscan
IPR018280Conserved_siteSmall ribosomal subunit protein uS3, conserved siteInterproscan
IPR005704FamilySmall ribosomal subunit protein uS3, bacterial-typeInterproscan
IPR004087DomainK Homology domainInterproscan
IPR009019Homologous_superfamilyK homology domain superfamily, prokaryotic typeInterproscan
IPR008991Homologous_superfamilyTranslation protein SH3-like domain superfamilyInterproscan
IPR001932DomainPPM-type phosphatase-like domainInterproscan
IPR036457Homologous_superfamilyPPM-type phosphatase-like domain superfamilyInterproscan
IPR015655FamilyProtein phosphatase 2CInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR050302FamilyRab GTPase-activating TBC domain-containing proteinInterproscan
IPR035969Homologous_superfamilyRab-GAP-TBC domain superfamilyInterproscan
IPR000195DomainRab-GAP-TBC domainInterproscan
IPR019344FamilyMitochondrial F1-F0 ATP synthase subunit F, predictedInterproscan
IPR019727FamilyATP synthase, F0 complex, subunit F, mitochondria, fungiInterproscan
IPR036849Homologous_superfamilyEnolase-like, C-terminal domain superfamilyInterproscan
IPR046945FamilyL-rhamnonate dehydratase-likeInterproscan
IPR029065DomainEnolase C-terminal domain-likeInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR039971FamilyPre-mRNA-splicing factor CWC24-likeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22683SPORULATION PROTEIN RELATEDInterproscan
PTHR40048RHAMNOSYL O-METHYLTRANSFERASEInterproscan
PTHR11817PYRUVATE KINASEInterproscan
PTHR13691RIBOSOMAL PROTEIN L2Interproscan
PTHR47992PROTEIN PHOSPHATASEInterproscan
PTHR31912IP13529PInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR47219RAB GTPASE-ACTIVATING PROTEIN 1-LIKEInterproscan
PTHR13794ENOLASE SUPERFAMILY, MANDELATE RACEMASEInterproscan
PTHR12930ZINC FINGER PROTEIN 183Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0030206Biological Processchondroitin sulfate biosynthetic processInterproscan
GO:0071770Biological ProcessDIM/DIP cell wall layer assemblyInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0008610Biological Processlipid biosynthetic processInterproscan
GO:0004743Molecular Functionpyruvate kinase activityInterproscan
GO:0006096Biological Processglycolytic processInterproscan
GO:0000287Molecular Functionmagnesium ion bindingInterproscan
GO:0030955Molecular Functionpotassium ion bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0015934Cellular Componentlarge ribosomal subunitInterproscan
GO:0016740Molecular Functiontransferase activityInterproscan
GO:0002181Biological Processcytoplasmic translationInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004722Molecular Functionprotein serine/threonine phosphatase activityInterproscan
GO:0006470Biological Processprotein dephosphorylationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0000276Cellular Componentobsolete mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)Interproscan
GO:0015986Biological Processproton motive force-driven ATP synthesisInterproscan
GO:0016052Biological Processcarbohydrate catabolic processInterproscan
GO:0016836Molecular Functionhydro-lyase activityInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0005684Cellular ComponentU2-type spliceosomal complexInterproscan
GO:0034247Biological ProcesssnoRNA splicingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00873PK, pyk; pyruvate kinaseEC:2.7.1.40
Spliceosomeko03041deepkoala
Membrane traffickingko04131deepkoala
Ribosomeko03011deepkoala
Exosomeko04147deepkoala

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