Gene detail

Detailed information of g29834.t1 in Montipora capitata

Genomic Location: xfSc0000777:14280...20157
NR annotation: XP_044175884.1, hamartin-like isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g29834.t1

atgacctcggctacggagacctcgtctgcatcgaatcagagagacttgttttgcctgctggacgcagataacataaagacagtagaggagactaaagccttgatacacgaaaatcttcattcatctcgcgatcctggattgctgcatgccatggtggagtattatttaaaaacacgctcgccagcatgtctgcagatattaagtggaatccacgaggctcgtgcacaggttgacaccgatgctgtagttttagaaagtgctgtcttaattattaccaccatgttacccatggttccagtctccattggtccttggcttccagaattgtttgagatattcaccaggttgtcatcatatagagcacatggtcaaggtaatgcacctgaagtgtatctccttcacttacatgttgcagtgtacatgtttttccaccgactttatgcaatgtacccaaacaacttcttgatgtacctcagaactctaaataatgaaccatccaaaaaagtcatttttcaagactacgtcaaacccatgctggagtatgtgcgagtgcatccttgtgtcatcacagagacagcacaaacagagactgataaacacaggtggaaacagaaagaggcacatgacattgtcatagaatgcatgaaagtctctttagatcctattgacagaatacaagaaaagggaaatttcctgtcctcatcaatgcacaggcatagttgtcaagaactgtatgctgataaatctattacttctatccttactgcgtcgtgggatagtgaaggactagggttggaaaagataaaggagcgccgaatgtctgattcagccacacagactggcaaatccttgcaaagcggtgacagtggcactgattcctgtagtttgcctgtggtttcttcaactgagattgcgtcagggtggagtacatcaggattgtgtcagttgaacactccaccttcctcacggatgtctccctcaacaagtaatcctgatttgacgtcatcactcacatgtaatattcattcccactgcagtacaccagctggtgtgtataccccaggacagtcccccacagcatcattgggagaagatgtagcatatccaccaagctactccagttcgccgtctatttcagggagtagaggaaagattggatcaatggcaggaatttataatgaccgagcgactttactcaagggtagcaaggcagctactagtcaggaagggcagctagcaagagccctgttctctgcactgaccttgcaaagtcagcaaaatcacaagtcagctcctgctgccattatgggacaccagtcatcaacaccaaacaaatgtcaggaagatggaaaaattgaaagtgccgtggaaacaagccacgaaatgagcaatgtctcacacacaagttctataacgagttttgaagcccatggtgaagaaaccaagggtagcgtgcggagaactagtttggaaaaaattgacagtggtacttttaatgtactgccaaaagaggaatttagagactcaagtgaggaaggggattatccactggaagtgaatcagtttaagcctcaggatgccagatctgttgagacaaatgcaggttttttgtctggatctctgacagcaatggctggtcaaactctagatgctggaacatctccaaacttggctgatgaatataaactgttaccagaaaatacttgttcaagcaaagagatcaatgtatcccatgaagtaatggtgcaatcttgttgtgaaaatgatggcttgattagtagcacccaacttgaagatgagctaggtagtacgataagtttggacaaaggccaatgtcatgcagaggctagtaaaaaggaaactagtgtagcatcctcggatgcatcatgtgacttgtccaaatgtcaagcaacaattcctgcttcacagccgaatcatcatggctttgttactagtgacgtttttgctggttttcctcagctgctccattggataagaggtgagctggattgtagcaacttcaatgcagaaagtgatgaaccaagcttctccagacctcagttcagtgcaatgtcatgcagggctagcccagtagaaatccttgataactacctcaagacaggaagcagcatacaccatggtgaactttcaaggtaa

Transcript

g29834.t1

ATGACCTCGGCTACGGAGACCTCGTCTGCATCGAATCAGAGAGACTTGTTTTGCCTGCTGGACGCAGATAACATAAAGACAGTAGAGGAGACTAAAGCCTTGATACACGAAAATCTTCATTCATCTCGCGATCCTGGATTGCTGCATGCCATGGTGGAGTATTATTTAAAAACACGCTCGCCAGCATGTCTGCAGATATTAAGTGGAATCCACGAGGCTCGTGCACAGGTTGACACCGATGCTGTAGTTTTAGAAAGTGCTGTCTTAATTATTACCACCATGTTACCCATGGTTCCAGTCTCCATTGGTCCTTGGCTTCCAGAATTGTTTGAGATATTCACCAGGTTGTCATCATATAGAGCACATGGTCAAGGTAATGCACCTGAAGTGTATCTCCTTCACTTACATGTTGCAGTGTACATGTTTTTCCACCGACTTTATGCAATGTACCCAAACAACTTCTTGATGTACCTCAGAACTCTAAATAATGAACCATCcaaaaaagtcatttttcaaGACTACGTCAAACCCATGCTGGAGTATGTGCGAGTGCATCCTTGTGTCATCACAGAGACAGCACAAACAGAGACTGATAAACACAGGTGGAAACAGAAAGAGGCACATGACATTGTCATAGAATGCATGAAAGTCTCTTTAGATCCTATTGACAGAATACAAGAAAAGGGAAATTTCCTGTCCTCATCAATGCACAGGCATAGTTGTCAAGAACTGTATGCTGATAAATCTATTACTTCTATCCTTACTGCGTCGTGGGATAGTGAAGGACTAGGGTTGGAAAAGATAAAGGAGCGCCGAATGTCTGATTCAGCCACACAGACTGGCAAATCCTTGCAAAGCGGTGACAGTGGCACTGATTCCTGTAGTTTGCCTGTGGTTTCTTCAACTGAGATTGCGTCAGGGTGGAGTACATCAGGATTGTGTCAGTTGAACACTCCACCTTCCTCACGGATGTCTCCCTCAACAAGTaatcctgatttgacgtcatcACTCACATGTAATATTCATTCCCACTGCAGTACACCAGCTGGTGTGTATACCCCAGGACAGTCCCCCACAGCATCATTGGGAGAAGATGTAGCATATCCACCAAGCTACTCCAGTTCGCCGTCTATTTCAGGGAGTAGAGGAAAGATTGGATCAATGGCAGGAATTTATAATGACCGAGCGACTTTACTCAAGGGTAGCAAGGCAGCTACTAGTCAGGAAGGGCAGCTAGCAAGAGCCCTGTTCTCTGCACTGACCTTGCAAAGTCAGCAAAATCACAAGTCAGCTCCTGCTGCCATTATGGGACACCAGTCATCAACACCAAACAAATGTCAGGAAGATGGAAAAATTGAAAGTGCCGTGGAAACAAGCCACGAAATGAGCAATGTCTCACACACAAGTTCTATAACGAGTTTTGAAGCCCATGGTGAAGAAACCAAGGGTAGCGTGCGGAGAACTAGTTTGGAAAAAATTGACAGTGGTACTTTTAATGTACTGCCAAAAGAGGAATTTAGAGACTCAAGTGAGGAAGGGGATTATCCACTGGAAGTGAATCAGTTTAAGCCTCAGGATGCCAGATCTGTTGAGACAAATGCAGGTTTTTTGTCTGGATCTCTGACAGCAATGGCTGGTCAAACTCTAGATGCTGGAACATCTCCAAACTTGGCTGATGAATATAAACTGTTACCAGAAAATACTTGTTCAAGCAAAGAGATCAATGTATCCCATGAAGTAATGGTGCAATCTTGTTGTGAAAATGATGGCTTGATTAGTAGCACCCAACTTGAAGATGAGCTAGGTAGTACGATAAGTTTGGACAAAGGCCAATGTCATGCAGAGGCTAGTAAAAAGGAAACTAGTGTAGCATCCTCGGATGCATCATGTGACTTGTCCAAATGTCAAGCAACAATTCCTGCTTCACAGCCGAATCATCATGGCTTTGTTACTAGTGACGTTTTTGCTGGTTTTCCTCAGCTGCTCCATTGGATAAGAGGTGAGCTGGATTGTAGCAACTTCAATGCAGAAAGTGATGAACCAAGCTTCTCCAGACCTCAGTTCAGTGCAATGTCATGCAGGGCTAGCCCAGTAGAAATCCTTGATAACTACCTCAAGACAGGAAGCAGCATACACCATGGTGAACTTTCAAGGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92574	Hamartin OS=Homo sapiens OX=9606 GN=TSC1 PE=1 SV=2
Q9EP53	Hamartin OS=Mus musculus OX=10090 GN=Tsc1 PE=1 SV=1
Q9Z136	Hamartin OS=Rattus norvegicus OX=10116 GN=Tsc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004722 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04388 all species →	Hamartin	Hamartin protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007483 all species →	Family	Hamartin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15154 all species →	HAMARTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0032007 all species →	Biological Process	negative regulation of TOR signaling	Interproscan
GO:0033596 all species →	Cellular Component	TSC1-TSC2 complex	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g29834.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.