Detailed information of g29928.t1 in Acropora digitifera

Genomic Location: chr14Alt:10618564...10625400
NR annotation: XP_029207267.2, TNF receptor-associated factor 6-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DJN2TNF receptor-associated factor 6-B OS=Xenopus laevis OX=8355 GN=traf6-b PE=2 SV=1
Q12933TNF receptor-associated factor 2 OS=Homo sapiens OX=9606 GN=TRAF2 PE=1 SV=2
Q28DL4TNF receptor-associated factor 6 OS=Xenopus tropicalis OX=8364 GN=traf6 PE=2 SV=1
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02176
all species →		zf-TRAFTRAF-type zinc fingerFamilyInterproscan
PF21355
all species →		TRAF-mep_MATHTRAF/meprin, MATH domainDomainInterproscan
PF13920
all species →		zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001293
all species →		DomainZinc finger, TRAF-typeInterproscan
IPR002083
all species →		DomainMATH/TRAF domainInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR049342
all species →		DomainTRAF1-6/MEP1A/B-like, MATH domainInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR008974
all species →		Homologous_superfamilyTRAF-likeInterproscan
IPR012227
all species →		FamilyTNF receptor-associated factor TRAF, metazoaInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10131
all species →		TNF RECEPTOR ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0007165
all species →		Biological Processsignal transductionInterproscan
GO:0042981
all species →		Biological Processregulation of apoptotic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g29928.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP