Gene detail

Detailed information of g30.t1 in Acropora digitifera

Genomic Location: chr1Alt:411894...416995
NR annotation: XP_015761909.1, PREDICTED: programmed cell death protein 10-like isoform X2 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIV5	Programmed cell death protein 10 OS=Gallus gallus OX=9031 GN=PDCD10 PE=2 SV=1
Q8VE70	Programmed cell death protein 10 OS=Mus musculus OX=10090 GN=Pdcd10 PE=1 SV=1
Q8AVR4	Programmed cell death protein 10 OS=Xenopus laevis OX=8355 GN=pdcd10 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20929 all species →	PDCD10_N	Programmed cell death protein 10, dimerisation domain	Domain	Interproscan
PF06840 all species →	PDC10_C	Programmed cell death protein 10, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009652 all species →	Family	Programmed cell death protein 10	Interproscan
IPR048288 all species →	Domain	Programmed cell death protein 10, dimerisation domain	Interproscan
IPR053750 all species →	Homologous_superfamily	Programmed Cell Death 10 Homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13250 all species →	TF-1 CELL APOPTOSIS RELATED PROTEIN-15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0043406 all species →	Biological Process	positive regulation of MAP kinase activity	Interproscan
GO:0090443 all species →	Cellular Component	FAR/SIN/STRIPAK complex	Interproscan
GO:1903358 all species →	Biological Process	regulation of Golgi organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18269	PDCD10, CCM3; programmed cell death protein 10	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g30.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

162.5Max TPM

117.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	117.86	162.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	162.49
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	156.28
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	145.84
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	142.43
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	141.58
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	134.78
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	133.61
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	130.89
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	130.56
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	127.69
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	127.38
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	127.16
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	127.11
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	126.01
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	124.41
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	122.46
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	122.17
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	120.80
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	118.41
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	117.89
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	116.16
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	116.14
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	115.03
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	113.42
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	109.87
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	109.36
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	108.56
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	108.37
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	107.41
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	106.88
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	103.12
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	102.82
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	101.56
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	94.15
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	92.20
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	89.88
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	89.86
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	88.41
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	83.46

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.