Gene detail

Detailed information of g30.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCG8544281.1, DNA mismatch repair protein MutS [Alphaproteobacteria bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5VN83	DNA mismatch repair protein MutS OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) OX=444178 GN=mutS PE=3 SV=1
Q2YNZ0	DNA mismatch repair protein MutS OS=Brucella abortus (strain 2308) OX=359391 GN=mutS PE=3 SV=1
Q57FM9	DNA mismatch repair protein MutS OS=Brucella abortus biovar 1 (strain 9-941) OX=262698 GN=mutS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000306 (this species only)
Orthogroup (gene family)	OG0001090 (this species only)
Orthogroup (gene family)	OG0002059 (this species only)
Orthogroup (gene family)	OG0002707 (this species only)
Orthogroup (gene family)	OG0004418 (this species only)
Orthogroup (gene family)	OG0004432 (this species only)
Orthogroup (gene family)	OG0005817 (this species only)
Orthogroup (gene family)	OG0009329 (this species only)
Orthogroup (gene family)	OG0009525 (this species only)
Orthogroup (gene family)	OG0032546 (this species only)
Orthogroup (gene family)	OG0032554 (this species only)
Orthogroup (gene family)	OG0059932 (this species only)
Orthogroup (gene family)	OG0080459 (this species only)
Orthogroup (gene family)	OG0172239 (this species only)
Orthogroup (gene family)	OG0173680 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00305 all species →	Lipoxygenase	Lipoxygenase	Domain	Interproscan
PF00654 all species →	Voltage_CLC	Voltage gated chloride channel	Family	Interproscan
PF04910 all species →	Tcf25	Transcriptional repressor TCF25	Repeat	Interproscan
PF03283 all species →	PAE	Pectinacetylesterase	Family	Interproscan
PF12742 all species →	Gryzun-like	Gryzun, putative Golgi trafficking	Domain	Interproscan
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF05190 all species →	MutS_IV	MutS family domain IV	Domain	Interproscan
PF00488 all species →	MutS_V	MutS domain V	Domain	Interproscan
PF05192 all species →	MutS_III	MutS domain III	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13561 all species →	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000907 all species →	Family	Lipoxygenase	Interproscan
IPR013819 all species →	Domain	Lipoxygenase, C-terminal	Interproscan
IPR036226 all species →	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR046342 all species →	Homologous_superfamily	CBS domain superfamily	Interproscan
IPR014743 all species →	Homologous_superfamily	Chloride channel, core	Interproscan
IPR001807 all species →	Family	Chloride channel, voltage gated	Interproscan
IPR050970 all species →	Family	Voltage-gated chloride channel	Interproscan
IPR006994 all species →	Family	TCF25/Rqc1	Interproscan
IPR004963 all species →	Family	Pectinacetylesterase/NOTUM	Interproscan
IPR025876 all species →	Domain	Trafficking protein particle complex subunit 11, C-terminal	Interproscan
IPR050840 all species →	Family	Adaptor Complexes Large Subunit	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR036187 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR000432 all species →	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR007861 all species →	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR007696 all species →	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011184 all species →	Family	DNA mismatch repair Msh2-type	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036720 all species →	Homologous_superfamily	Ran-GTPase activating protein 1, C-terminal domain superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR051737 all species →	Family	L-xylulose reductase/Carbonyl reductase	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771 all species →	LIPOXYGENASE	Interproscan
PTHR45720 all species →	CHLORIDE CHANNEL PROTEIN 2	Interproscan
PTHR22684 all species →	NULP1-RELATED	Interproscan
PTHR21562 all species →	NOTUM-RELATED	Interproscan
PTHR22780 all species →	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan
PTHR24118 all species →	POTE ANKYRIN DOMAIN	Interproscan
PTHR44252 all species →	D-ERYTHRULOSE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0034440 all species →	Biological Process	lipid oxidation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005247 all species →	Molecular Function	voltage-gated chloride channel activity	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:1990112 all species →	Cellular Component	RQC complex	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0030124 all species →	Cellular Component	AP-4 adaptor complex	Interproscan
GO:0140312 all species →	Molecular Function	cargo adaptor activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0004090 all species →	Molecular Function	carbonyl reductase (NADPH) activity	Interproscan
GO:0005997 all species →	Biological Process	xylulose metabolic process	Interproscan
GO:0006006 all species →	Biological Process	glucose metabolic process	Interproscan
GO:0050038 all species →	Molecular Function	L-xylulose reductase (NADPH) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03555	mutS; DNA mismatch repair protein MutS	-	DNA repair and recombination proteins	ko03400	deepkoala
K05011	CLCN2; chloride channel 2	-	Ion channels	ko04040	deepkoala
K24970	TCF25, RQC1; transcription factor 25	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.